createFrequencyMat {PhosR}R Documentation

Create frequency matrix

Description

Create frequency matrix

Usage

createFrequencyMat(substrates.seq)

Arguments

substrates.seq

A substrate sequence

Value

A frequency matrix of amino acid from substrates.seq.

Examples


data("phospho_L6_ratio")

# We will create a frequency matrix of Tfg S198 phosphosite.
rownames(phospho.L6.ratio)[1]
substrate.seq = unlist(lapply(strsplit(rownames(phospho.L6.ratio)[1],
                                    split = "~"), function(i) i[4]))
freq.mat = createFrequencyMat(substrate.seq)
[Package PhosR version 1.0.0 Index]