get_KGML {KEGGlincs} | R Documentation

## Download and parse KGML file

### Description

Download and parse KGML file

### Usage

    get_KGML(pathwayid, get_if_no_edges = FALSE)

### Arguments

`pathwayid` | A KEGG pathway ID of the form "hsa12345" (only human pathways currently)
`get_if_no_edges` | A logical indicator; if pathway has no edges returns null value if set to TRUE

### Value

an object of Formal class KEGGPathway

### Examples

    mtor_KGML <- get_KGML("hsa04150")

    # Some pathways contain only node information; since the purpose of this
    # package is to explore pathways in an edge-focused manner, the default
    # options return a warning message instead of a parsed KGML file if the
    # input pathway has no edges.
    ribosome_KGML <- get_KGML("hsa03020")
    ribosome_KGML <- get_KGML("hsa03020", get_if_no_edges = TRUE)

[Package KEGGlincs version 1.16.0 Index]