# Generated by roxygen2: do not edit by hand

export(CIS_grubbs)
export(CIS_volcano_plot)
export(aggregate_metadata)
export(aggregate_values_by_key)
export(annotation_IS_vars)
export(as_sparse_matrix)
export(association_file_columns)
export(clinical_relevant_suspicious_genes)
export(comparison_matrix)
export(compute_abundance)
export(compute_near_integrations)
export(cumulative_count_union)
export(date_columns_coll)
export(date_formats)
export(default_stats)
export(generate_Vispa2_launch_AF)
export(generate_blank_association_file)
export(import_association_file)
export(import_parallel_Vispa2Matrices_auto)
export(import_parallel_Vispa2Matrices_interactive)
export(import_single_Vispa2Matrix)
export(known_clinical_oncogenes)
export(mandatory_IS_vars)
export(matching_options)
export(quantification_types)
export(realign_after_collisions)
export(reduced_AF_columns)
export(remove_collisions)
export(sample_statistics)
export(separate_quant_matrices)
export(threshold_filter)
export(top_integrations)
export(unzip_file_system)
import(BiocParallel)
import(dplyr)
import(ggplot2)
import(lifecycle)
import(upsetjs)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpok)
importFrom(BiocParallel,bpstop)
importFrom(BiocParallel,bptry)
importFrom(data.table,fread)
importFrom(data.table,melt.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,group_split)
importFrom(dplyr,inner_join)
importFrom(dplyr,intersect)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,slice)
importFrom(forcats,as_factor)
importFrom(forcats,fct_inseq)
importFrom(fs,as_fs_path)
importFrom(fs,dir_create)
importFrom(fs,dir_exists)
importFrom(fs,dir_ls)
importFrom(fs,file_exists)
importFrom(fs,is_dir)
importFrom(fs,path)
importFrom(fs,path_dir)
importFrom(fs,path_ext)
importFrom(fs,path_wd)
importFrom(ggrepel,geom_label_repel)
importFrom(grDevices,colorRamp)
importFrom(grDevices,rgb)
importFrom(htmltools,browsable)
importFrom(htmltools,div)
importFrom(htmltools,h1)
importFrom(htmltools,h2)
importFrom(htmltools,h3)
importFrom(htmltools,h4)
importFrom(htmltools,save_html)
importFrom(htmltools,tagList)
importFrom(htmltools,tags)
importFrom(lubridate,parse_date_time)
importFrom(magrittr,`%>%`)
importFrom(psych,describe)
importFrom(purrr,flatten)
importFrom(purrr,is_empty)
importFrom(purrr,is_formula)
importFrom(purrr,is_function)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map2_dfr)
importFrom(purrr,map2_lgl)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfr)
importFrom(purrr,map_lgl)
importFrom(purrr,pmap)
importFrom(purrr,pmap_chr)
importFrom(purrr,pmap_df)
importFrom(purrr,pmap_dfr)
importFrom(purrr,reduce)
importFrom(purrr,set_names)
importFrom(purrr,walk)
importFrom(purrr,walk2)
importFrom(reactable,colDef)
importFrom(reactable,colFormat)
importFrom(reactable,reactable)
importFrom(reactable,reactableTheme)
importFrom(readr,cols)
importFrom(readr,parse_factor)
importFrom(readr,problems)
importFrom(readr,read_delim)
importFrom(readr,write_tsv)
importFrom(readxl,read_excel)
importFrom(rlang,.data)
importFrom(rlang,`:=`)
importFrom(rlang,abort)
importFrom(rlang,arg_match)
importFrom(rlang,call2)
importFrom(rlang,dots_list)
importFrom(rlang,env_bind)
importFrom(rlang,eval_tidy)
importFrom(rlang,expr)
importFrom(rlang,fn_fmls_names)
importFrom(rlang,inform)
importFrom(rlang,parse_expr)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pt)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_pad)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(tibble,add_column)
importFrom(tibble,add_row)
importFrom(tibble,as_tibble)
importFrom(tibble,as_tibble_col)
importFrom(tibble,as_tibble_row)
importFrom(tibble,is_tibble)
importFrom(tibble,tibble)
importFrom(tibble,tibble_row)
importFrom(tidyr,everything)
importFrom(tidyr,nest)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,separate)
importFrom(tidyr,unite)
importFrom(tidyr,unnest)
importFrom(tools,file_path_sans_ext)
importFrom(utils,read.csv)
importFrom(utils,read.delim)
importFrom(utils,tail)
importFrom(zip,unzip)
