1504b37a98d45ca34dbe7fa85323fd31 *CITATION
771753ed24a97789604415eec69db271 *DESCRIPTION
c24a0b8f1ba92b98f2cde883a19da666 *INDEX
d591327a0c782e5e99c49f34b3575c66 *INSPEcT_GUI_sample_dataset.rds
87a0176aae001d9f133b24c6f1207c2d *Meta/Rd.rds
5455691fac27f9522ae10d60bf04cd3a *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
0ac7deb9f3bdc851e8044225c8cc4e69 *Meta/hsearch.rds
caee083a2ff45910d118164bc8d27276 *Meta/links.rds
f7b5e41c3174f2499e7619de4e0fe453 *Meta/nsInfo.rds
f8ac4b0fa5075f4c9a15daa46fcceadd *Meta/package.rds
32f467f352658daaa46e0ac4db05e6b5 *Meta/vignette.rds
eee2b0a3d72ad2829fef197643c3e16c *NAMESPACE
eaeeba1671282bc58b7887d1e1dbd0da *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/INSPEcT
80dcf9ce5e29bd0ac3108f7f55614d56 *R/INSPEcT.rdb
6759940c3785df25361bff5c255af269 *R/INSPEcT.rdx
6882bed1c98f2800612e649300241cc2 *data/allcounts.RData
d379605e795823cef756cd143d41f4af *data/datalist
125a7b58cb4c7458a6c41333128e22d3 *data/featureWidths.RData
7d0f00bd1cc91077662de158904fa16b *data/libsizes.RData
94fd669d50e50391851f74ac45c4f009 *data/matureSim2replicates.RData
dcb6d7e5beda2ed50452acf2fd546614 *data/matureSim3replicates.RData
04dbd465f5b3cda2139957bef74ce1ed *data/nascentSim2replicates.RData
f4a57d80a79abe0aad0e7d285a66ca5c *data/nascentSim3replicates.RData
5963d44be20fecc761f33e3c6319cd2f *doc/INSPEcT.R
4d685676933fc63399b15d99c7276baf *doc/INSPEcT.Rmd
843e79818823d4cc245bb50e175e0107 *doc/INSPEcT.html
d59fa90eeed492709020b675728a9e94 *doc/INSPEcT_GUI.R
0e6d9143629db8b83e79e7562b0c01d8 *doc/INSPEcT_GUI.html
0ea086537528218afbeacebe991709ec *doc/INSPEcT_GUI.rmd
6587a178c2408d111e9d912568fe6506 *doc/index.html
66ac71c995262c4386e490ed9ec34690 *extdata/bamRep1.bam
73dc8a7014a13a16520e377e718b5fbb *extdata/bamRep2.bam
29ca188315fe36e861e786a499a1b482 *extdata/bamRep3.bam
6da0037e8c472f33092d506371ef4627 *extdata/bamRep4.bam
db8d6dcc66d62ba25ffe58d1316a2657 *help/AnIndex
9f34ce26ce9a063089d108c749533eb7 *help/INSPEcT.rdb
98d161169d079762f20867d34abfe2f9 *help/INSPEcT.rdx
e94e251ddb07ef870c6949413953eca8 *help/aliases.rds
d449f7d749c79daa308421efebf47418 *help/paths.rds
7112c3380b83ae31f8c73ef735886371 *html/00Index.html
f94a39e0b4109ecae5096e989af131d8 *html/AIC-INSPEcT-method.html
d84f940d9f48a0c93a6fe18299f3c7e1 *html/Extract.html
6995f68e4cc02e445cce78381fed59cc *html/INSPEcT-class.html
2a1eb7b4d06e4022d9b999dc8335a945 *html/INSPEcT-shinyApps.html
27bb49353d86e2690fd9bfa75f3222bb *html/INSPEcT.html
28471b20c4e7f786c92f4bf64d842e52 *html/INSPEcT_diffsteady-class.html
46d985c7fa86a34b86698a80f278b13b *html/INSPEcT_model-class.html
b2654287828b819ffc9a5d20a8f6275f *html/INSPEcT_steadyNoNascent-class.html
0e9b89cfc01cfefaa0b254d14ca41254 *html/PTratio.html
7e233d50504dd0bb14facf94224e099c *html/PTreg.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a10591a4374ee1fa5b6b0b4e472e417b *html/allcounts.html
978bb9ece33f961cc967e3f13581bceb *html/calculateRatePvals.html
8cad33e915613aff9479564007d1806d *html/chisqmodel.html
dfd3c85056b5935b49518093c27bdcd1 *html/chisqtest.html
61565999e9dcda753b4d6d7d2f6ed5f5 *html/combine.html
f40ec03d44693ab16c867d2dc4e83ea6 *html/compareSteady.html
ae4eda2d2cdd002dada979773d9803ab *html/compareSteadyNoNascent.html
8786900650d821164316d854daf552a6 *html/computeConfidenceIntervals.html
bd69cf35dc07d9a856e6cd6c3cd02216 *html/convergence.html
758777f973e54c7ccbe08415cbc676ed *html/correlationPlot.html
5b8ca805d99de6bc4564fbd720aa8827 *html/dim-INSPEcT-method.html
9f846115c311102a43a4b5c37024485b *html/featureNames-INSPEcT-method.html
7cb999996f227dbf3d038d764ff40506 *html/featureWidths.html
ddf1c93d26187ae5de994e462eaf9e21 *html/geneClass.html
a903edeb028627105422520d4c82114c *html/inHeatmap.html
9bf0b351f459f70340461008098203dd *html/inspectFromBAM.html
0cf61647e4a2aa2a1e2f66f514f19c54 *html/inspectFromPCR.html
aa018651270ca28754b13530d6d3e725 *html/labeledSF.html
289d5e6cadbd21ae1489e5647b404e4d *html/libsizes.html
74a60e021dd3c28b247d6c0489a96362 *html/logLik.html
a21221d6461fa5b9a879b25583f16063 *html/makeModelRates.html
1f032b8bbfd0d776e8642b4d579fffd2 *html/makeOscillatorySimModel.html
e0b802e0333d73849b8e377deada4ca5 *html/makeSimDataset.html
9e1dc15f6210a1160ab442e8f20b470f *html/makeSimModel.html
95c6c482b4f5df0d7e641fa586d9e23a *html/mature.html
f602af22470d7a924268a2cc73936ca8 *html/matureVar.html
f92a6e5fd28439e490edf39bc32b01c4 *html/modelRates.html
c156f605f3ddd7f74c0217593e978243 *html/modelRatesNF.html
64f7df961702b6ac5dc8f319c98c279b *html/modelSelection.html
4d53c60948de4c4745bd7403849a8f32 *html/modelingParams.html
d1b6b4f2cef52b3da660ff40af13b805 *html/nGenes.html
da9a4d92cb3ab4b5ea87a3cde394deb2 *html/nTpts.html
2f80409fc3dc684955ac29ff5f1f7948 *html/newINSPEcT.html
46a43aacea6fd21a0c0d0e3341312bf1 *html/plotGene.html
82dd33d44eb379a462412a8ee89b0ae5 *html/plotMA.html
3385670fa759a362e7aefa2faea4ab23 *html/plotPMgene.html
2ce852be1a269a0b372c368da4587922 *html/plotPMtrend.html
a900b596d16a69d059e3825581c52a22 *html/premature.html
a3de4733a76aa21ba25b4ba05a5ee63b *html/prematureVar.html
2f1495e599b435c251de646e06343e6d *html/processingDelay.html
9721042b5ee7fdcfa2805b3ca8cd298a *html/quantifyExpressionsFromBAMs.html
9de794deaaec20284d379c0a067b6631 *html/quantifyExpressionsFromBWs.html
9000772a9a4a1e643dd128bedbb5b061 *html/quantifyExpressionsFromTrAbundance.html
f45f147b186c84eaadb08486e426edef *html/quantifyExpressionsFromTrCounts.html
798e9b529fb02bbc4db5da8db60aaf80 *html/ratePvals.html
3556d0ecbb1d1735636e46efc7578427 *html/ratesFirstGuess.html
e2117d84be04bc4c08c724524df85b53 *html/ratesFirstGuessVar.html
78bb14f34c5bdf7bd7370a4c07c13ecf *html/removeModel.html
c237f52565fcd0a0bfa7a83a2a1a897e *html/rocCurve.html
4a92594dbeb402566001e10af2ffe607 *html/rocThresholds.html
6ad88d19a2b6725040e3cefbeb476e86 *html/setConfidenceIntervals.html
0a541bcfbf8901ceb1ecb8fbaa064e89 *html/simData3rep_Nascent.html
db738bdf59cb76c7db31d315b74e2c0f *html/simData3rep_NoNascent.html
d13915466932643bc475cb6fea2e5037 *html/simData4rep_Nascent.html
ebaaedb91e080018941ec7fc9de37721 *html/simData4rep_NoNascent.html
a32ea26825a2a3fcd2b0df936df8e561 *html/split.html
9f11dbc2a1aedf01d87cd75185d136b3 *html/tpts.html
bf98afdc6a916668ff1b12e6c9ef7dfe *html/viewConfidenceIntervals.html
60a2e186fe64c32d64d95fa67b25c760 *html/viewModelRates.html
2c0b29b4800877dd914697fb7a7ed58d *nascentAnnTabPCR.csv
b5c6dc4404607f500bcfd07cfc0ed2c6 *nascentInspObj.rds
56541634c4aaa249b4950c958d0cffa4 *nascentInspObj10.rds
4d29c7b19a149fda608e89a513811729 *totalAnnTabPCR.csv
