9488dc6f16ff2d21fa2a310d18455d20 *DESCRIPTION
36e9cdb7b00a09aff787028035da87e8 *INDEX
aab1a1a690350b2cafe0aa22ee226218 *LICENSE
f7df95564e70dba321b57f06e3580d47 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
0086f7420d481886129b64251708c069 *Meta/hsearch.rds
32f6fb0cea3fda7bed63f208bfedf67b *Meta/links.rds
d4356a49231ee7cbbb13590b94188a97 *Meta/nsInfo.rds
b16b41dc3f6f8b77332b2f0345b3fdd7 *Meta/package.rds
0bced974e387e75b68301a088997363a *Meta/vignette.rds
168ebfab71a76fab29dffd78ae64b4b7 *NAMESPACE
e5b46e94fec5fe30da73f727cf97644e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GeneStructureTools
d0e08d41094497d4f0a7613a115abf70 *R/GeneStructureTools.rdb
c9cae51d3e6ab5d4128d93d5fde76bbb *R/GeneStructureTools.rdx
68c89b782ef6faea31d18e6081cf32b8 *doc/Vignette.R
a986096c2549236e38c331c1eb88d14f *doc/Vignette.Rmd
a1ec097056d4f7ba98ee87636a403958 *doc/Vignette.html
542839b3e9e3893d67c2321bebd1b96d *doc/index.html
a9ba88162c20eddfc11c351d92fdcd09 *extdata/dexseq_process.R
96640b2e1735a4a23445a79154a89427 *extdata/dexseq_results_significant.txt
21a6c46d6193261e7bbcf4c7e1849f61 *extdata/example_gtf.gtf
c500de5992f92ebc83581899338c6d87 *extdata/gencode.vM14.dexseq.gtf
b28e8fedfee20f988113945166d52e0d *extdata/leafcutter/per_intron_results.tab
962287f8f3daaaae762c5f2eb8ab6267 *extdata/leafviz2table.R
d340f2509b1c4e1ccc74ed9e3b7799a0 *extdata/whippet/01_v_21.diff.gz
a751ff8f2e7f44be9fafbcedf6380afc *extdata/whippet/A01.jnc.gz
14fc894210fd1272e528613d72c5827b *extdata/whippet/A01.psi.gz
4bb796ee52ba3c7bff0733fd152de391 *extdata/whippet/A21.jnc.gz
bab86c79e977dd697ad0fdf037e2575d *extdata/whippet/A21.psi.gz
a64605c248ed60f04f1d5dfc334f181d *extdata/whippet/B01.jnc.gz
44c88c32417f2146e5e1a394243531be *extdata/whippet/B01.psi.gz
1210ab94aae2149703812243434a9883 *extdata/whippet/B21.jnc.gz
63b0451eca429697512091dbe65874cc *extdata/whippet/B21.psi.gz
f0e50ed69a8762a0c858c1b759ec7294 *help/AnIndex
9ef52a5f74425c53831e22907d7025f1 *help/GeneStructureTools.rdb
ff07b532e0dc993eab0388ce815a1ac3 *help/GeneStructureTools.rdx
9d275c29d841bfcf2a365f93e559f93d *help/aliases.rds
e79215fbc3c3d7f8e96b21ed911c59f7 *help/paths.rds
3dad5e3b9537734026aab66b8c0171ce *html/00Index.html
05196a0cc44cf0d3fd59c4b0a0ee5dd9 *html/DEXSeqIdsToGeneIds.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c5dd885a77f33703746d0b5cd855471a *html/UTR2UTR53.html
9368dbd1bba730ec621570f53f72926d *html/addBroadTypes.html
66443164b1cda8439988b5085d641753 *html/addIntronInTranscript.html
7313ab9dd7200059534b271a9b2f16e8 *html/addSets.html
a7ad12bee1e7b1aa21d003590ce2db1d *html/alternativeIntronUsage.html
036a7860617cab7433f0868b879437b6 *html/annotateGeneModel.html
4c50b520375f050be266f04c81aea44d *html/attrChangeAltSpliced.html
81cc26c7fcd3fe6b178fc53f4da54892 *html/coordinates-methods.html
709618146ee029955d2a12d393d25604 *html/cumsumANDpad.html
bc509ba70a25e272afc016b87390d167 *html/diffSplicingResults-methods.html
2ef509d97b509a1279729e2b1561d516 *html/exonsToTranscripts.html
c4aa4fe9f095447e4e615e07175242d0 *html/filterGtfOverlap.html
fffa6f20d747843160568d129938438e *html/filterWhippetEvents.html
1e8bc8bcb204bdee31786d9a44a6e21a *html/findDEXexonType.html
2483f7d963cde2c958257c28004bead0 *html/findExonContainingTranscripts.html
62c7afd3be2cac48266c0da887d84675 *html/findIntronContainingTranscripts.html
6ccc1c45fd8650ef6caf51682ee922ae *html/findJunctionPairs.html
c88da699a1094436cd32563aa887a5e9 *html/formatWhippetEvents.html
1dd28bfa7ed5b60cfe565a25cd01ca7c *html/getOrfs.html
ce0c2dfa356944b9908b31a77549b742 *html/getUOrfs.html
168037f0fca5f206410dbba1e7f3bc65 *html/junctions-methods.html
f7212ba7d1a9d98518be6ac2203463b2 *html/leafcutterTranscriptChangeSummary.html
460cfde03ff1d4e3344b6fd1a0f844e2 *html/makeGeneModel.html
e541818405be37c8d8c6dd12f1ba8481 *html/maxLocation.html
84bf38ce919b6b09c6004e84801ec09d *html/orfDiff.html
afd240da4d287166c378c4310cc07d1e *html/orfSimilarity.html
72ce4e53be4966dd8c325c4890ed5570 *html/overlapTypes.html
e0b37bbe880997e99cd7b7df7b3b8ea4 *html/readCounts-methods.html
e6fcfd8d91a93acfd1da63c6d48248a4 *html/readWhippetDIFFfiles.html
390a9800c38fa34522b9fb23d74e0cf0 *html/readWhippetDataSet.html
004a2dcd9aa2e3a68324e9a61958ad47 *html/readWhippetJNCfiles.html
7030a186a31dc3c5b07869b88e7abfb4 *html/readWhippetPSIfiles.html
315a837757b835e24763836e87349dd8 *html/removeDuplicateTranscripts.html
8030432edd71bb03c36316bb27c523e2 *html/removeSameExon.html
7286b24b6ba4170ed096e0832fa27196 *html/removeVersion.html
fc83757a456401e0749e1fe5038b8c98 *html/reorderExonNumbers.html
ab7323f36697fd67b8003b06369d8665 *html/replaceJunction.html
0cfb4f2e7624365c02a75da158a1e668 *html/skipExonInTranscript.html
f8483be2e50b3a478d048601b72e5c4c *html/summariseExonTypes.html
84dbb25e4f4670e0a3f8b3d08ba45f14 *html/transcriptChangeSummary.html
22dbce882108e355160c6288acd417c0 *html/whippetDataSet-class.html
85e4f488750862d3f1f4370299c25db3 *html/whippetTranscriptChangeSummary.html
