7918d1f2fba4b9f469105f85b6d2eec7 *CITATION
97b33aca734922adebf907e68f090a32 *DESCRIPTION
989d8ef4f926c07271682e5c49271316 *INDEX
0a1899da2d6de348416c62daad9948f7 *LICENSE
31f2d2b963add27203d67ea0a93c2a68 *Meta/Rd.rds
cc4532b99fe09c5567216473af102ecb *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
59db737ff185c9ae7aff8deeb65af06b *Meta/hsearch.rds
7ae72f9ef11a447309a24c47ceba5807 *Meta/links.rds
589b38a9839f18b9b4dc1a7bdd46e8ef *Meta/nsInfo.rds
f79b57569bcab9c4f6e9142050f78163 *Meta/package.rds
9a8471fb82cb024f85657c7ec2e4ae9e *Meta/vignette.rds
7e155497cf2b9af6003d3fac47a5606d *NAMESPACE
42153617d38fff410d2b7e3554866e08 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/DAMEfinder
7ff01644af0fcd3dcf8b2ad52d6d83ec *R/DAMEfinder.rdb
9aa39b13bad67360ef8be77849a7940c *R/DAMEfinder.rdx
c9d2930d4d9c301a5bf786ecae2eded9 *data/extractbams_output.rda
14191c1edb7ae295a9c9838589416b45 *data/readtuples_output.rda
9333d55f6092e6ced4d4b800dc160cf8 *doc/DAMEfinder_workflow.R
ba096bd56bc841fe3502adff53075f33 *doc/DAMEfinder_workflow.Rmd
8df6aade36450582e5b494cf4572266b *doc/DAMEfinder_workflow.html
680dc99d32f897e1eb8d7cb9026a9120 *doc/index.html
daf558746caa459d128b1edcfd93915e *extdata/CRC1.chr19.trim.vcf
a3fa6a42464200025a673ef030513998 *extdata/CRC1_chr19.qs.CG.2.tsv.gz
0f29a7e50e6e2979be3a9a51014d1197 *extdata/CRC1_chr19_trim.bam
1a7c9830c7d6b8b09906b1dc7121b473 *extdata/CRC1_chr19_trim.bam.bai
9222a67cd3a6b0cfc18efd1355fcbc51 *extdata/NORM1.chr19.trim.vcf
cbc710962aa110134e2d5afcf3ca86b2 *extdata/NORM1_chr19.qs.CG.2.tsv.gz
8530eed239d8855e2491aa8c4283dccb *extdata/NORM1_chr19_trim.bam
0289955249e6ca9dfc11d3857e8aca94 *extdata/NORM1_chr19_trim.bam.bai
9cc429baf829fcceb7d0bf6d954f72dc *figures/DAME_only30reads.png
819d71dc2155c348f38b8a8c04cd59f7 *figures/DAME_snp_allsamps.png
77cb5e71d84ca11e26254618cb61321e *figures/DAME_snp_allsamps_median.png
8b5f4d1f6c5300c3318e75cd6e4c7742 *figures/DAME_snp_sampledreads.png
69b1d037d321c943b119a2019dc1c58b *figures/DAME_tuple_allsamps.png
5ca20291a9dc0fabd5e7dd7377cf5d14 *figures/DAME_tuple_allsamps_median.png
a9107c0f715cc46a7c8356fa1a6e1014 *figures/DAMEfinder_workflow.png
cffe6fdf85143d33894cf85dd951b0da *figures/damefindersticker.png
9676c9c0ad674f0a2470ca1d4ae560d6 *help/AnIndex
ee81701ecf30a910772ef06a11c2666d *help/DAMEfinder.rdb
82a9f6743761cc6d6e20426ca29c25a9 *help/DAMEfinder.rdx
a026bdfbab636abdcbdc5d30bef740c1 *help/aliases.rds
4203efde37b33d7b8a4d9b8e11981055 *help/paths.rds
7cc9e78397072d94b5dfeae37b371692 *html/00Index.html
9f3195777ed1f08a2c0ed8cce0b95bf6 *html/DAMEfinder.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c1cdcbdb75a66581f9d825c75272abb1 *html/calc_asm.html
d8363b883438fbcfb5e9440586114b6e *html/calc_derivedasm.html
95efe8d018a1f71e70d440fe17735b9b *html/calc_logodds.html
1bc37332a0e9a7684d9b57fe09a31c10 *html/calc_score.html
ffda2004b11782085528247dd2211797 *html/calc_weight.html
27aca2f8caaabb1e6214f2c59fff2ff3 *html/dame_track.html
46865d71df684289df7a2ecd12251e18 *html/dame_track_mean.html
cdf1bf04763fd55f2977a3ce9a780651 *html/empirical_pval.html
193d6f5f4a77b2ea19337dd3e4fb199f *html/extract_bams.html
d7f4ebd0c3f202606165038f4b50ef49 *html/extractbams_output.html
c2e5df8e3beb86272fd7698d1f8acab6 *html/find_dames.html
3a41f6e75761e1e504904efb5fb5af00 *html/getMD.html
5be82ffa37468f8544b7fae39b30840b *html/get_tstats.html
0e396eaeb485a931ebf443b05f237720 *html/methyl_MDS_plot.html
dab9beb021fb9381227bf0b2ee6d61ab *html/methyl_circle_plot.html
ad3018ef89ec8dfd4cdb5b4cbfc8bef5 *html/methyl_circle_plotCpG.html
030a2049ea7a0f0d78a5895712938f4b *html/modulus_sqrt.html
6616671cd129fc7e5216f284019468b0 *html/read_tuples.html
95ffac1d0be37d9326503512a180a481 *html/readtuples_output.html
6193d96fcc700e64796f84c9c855b6d9 *html/simes_pval.html
a51c09ef0a87867ab195ac448aff05cb *html/splitReads.html
52f98e1f1b0a186bd57f463553e8f624 *scripts/extractbams_output.R
d29bf6b8be58a52fb355591eb4d6e11a *scripts/file_description.txt
0e79c5fc275fb6ab2c7f30b38347c4b6 *scripts/readtuples_output.R
