4ad19164b71f48a159aee0245eee9ad2 *CITATION
bf15f1d9ba04e579ba6e1ed25ec7b5f3 *DESCRIPTION
bdebbe6a515e01b9152333436324d824 *INDEX
8d7b252eb54a520b27beaeaa9084f3c2 *Meta/Rd.rds
1209aaec3be11cb522586be66d1fd2af *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
19cf8ff3b85b8d62951b1fc74a86efe9 *Meta/hsearch.rds
0c23e869e5e87d1b6f5565e3cf904f50 *Meta/links.rds
9e37772c4e1bcb94251c2129540b92c4 *Meta/nsInfo.rds
758e84804224fd130039d0bc8c279383 *Meta/package.rds
969460a3aec2fe8af82d12f763c4f522 *Meta/vignette.rds
86c0b651bfa817b420bdda5df31a7ac4 *NAMESPACE
590504cacc0084a282f24e3746aedeb4 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/CrispRVariants
849aaca5618f03a7a77e6d9c56c5d62e *R/CrispRVariants.rdb
dedd12e53208dc41299e23a142bda40e *R/CrispRVariants.rdx
00ac21262dd98412e87bea94a1010340 *data/Rdata.rdb
a151e1d0a2f3f5278036776dc14bf003 *data/Rdata.rds
a058c2a7d0b9058c8fefc3715cee3fdc *data/Rdata.rdx
80f8c2fbcf76e450958d2c32265b34fc *doc/index.html
1dbcdff8aee5885b08d9f481eb4b9f68 *doc/user_guide.R
030ad422de6cac5ecb1ef5c3ceaf6fc0 *doc/user_guide.Rmd
19c394359327098184639a76de271fc5 *doc/user_guide.pdf
65dcdf1d72c2cb6532b582faf9648242 *extdata/Danio_rerio.Zv9.73.gol.sqlite
3d09e19e1a84f4163a94c7ac41b4d7a1 *extdata/GRCz10_81_ptena_txdb.sqlite
cb32a40b50b777c9872e74844182b9cc *extdata/IM2033.ab1
31f41ba5b5f3ffe65a72638ac48d59ee *extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
87fbf13a52e1801266cb385c7919a4e9 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
a5faefe3c25efbb5817f4235b9b7ce57 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
aa172362f53fb84dfc85ff43e8b58232 *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
64f942fe93f6cb37549443b020be66bd *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
dbfe81d150812e6f46063d6e3af8a7e9 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
eee2ae352b4a9fedb9ceff871687b1a8 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
236be679c9bc2a2f812ff382455e885c *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
eada6440c415bffc39581741c9d0a790 *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
4a3d7a75593c3a87d833e05158e4f380 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
c3644513e0f3ccf53022a838cac19fb1 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
a049fec3b3743cdbcab988593e07fe95 *extdata/bed/guide.bed
2d865f43e37fb89160b910b38bf2d5d6 *extdata/cntnap2b_test_data.fastq.gz
cf0e50eedb184b713c6f3d8a5d134b95 *extdata/cntnap2b_test_data_guide.bed
de83e1ebb8d157390a22a65d54f41f23 *extdata/cntnap2b_test_data_s.bam
f02d12f0ea6761b0eccc19df7a7a1b6c *extdata/gol_F1_clutch_1_embryo_1_s.bam
25956b49d20dd443e4ce9ca7e943796e *extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
15010247fef191cf1d68d54cd20677da *extdata/gol_F1_clutch_1_embryo_2_s.bam
d0cdaeb0fda0197a6d62454d1c39b2ca *extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
853c55081cbbc183fc46976430fa650e *extdata/gol_F1_clutch_1_embryo_3_s.bam
cc78c8e5d1d87f8571a6b71e1bd555ee *extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
4cbc3ed5188a19125e6d50a27ff029e6 *extdata/gol_F1_clutch_1_embryo_4_s.bam
1ab0458554627ac4566378c536bc12a4 *extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
9b27d523742d463169189d8c72060f7a *extdata/gol_F1_clutch_1_embryo_5_s.bam
6ef0cf85fe25ad4862a63f1aec0cf394 *extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
411c8683cbd70b8d9cb9801ac5999b38 *extdata/gol_F1_clutch_1_embryo_6_s.bam
a1b074693d1b5052595a594e37b3ae96 *extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
d677e388666d320a0dc80e187b4d30db *extdata/gol_F1_clutch_1_embryo_7_s.bam
f87f533910ac9896d9e4b797a885d18c *extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
9e6c0eb2312197f90d0b2f352dda6b10 *extdata/gol_F1_clutch_1_embryo_8_s.bam
3a778946d9df16b7926f382258402dde *extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
672eab0fa40051a31a81c9c174670eb8 *extdata/gol_F1_clutch_2_embryo_4_s.bam
1b157a9c4b418311efc6caabec3cfa38 *extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
89b05c3e000a2e938ea38a1f90366ac2 *extdata/gol_F1_metadata.txt
01243899f4f39295d5efa23b382c3949 *extdata/gol_F1_metadata_small.txt
a8ef6a3063c96abb61e28f05667eb361 *extdata/metadata/metadata.xls
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a569e6388cd16318dd2bad059cad710d *extdata/wtx_Sanger.png
af3584ce04196fafd561da7cd20608a7 *help/AnIndex
6e22a29d97f79db26281e0fbe96917b4 *help/CrispRVariants.rdb
5261fa13b4060bc2483d8941586f27a0 *help/CrispRVariants.rdx
6b20f41714aeb3d29c1151c88223a6ff *help/aliases.rds
16614d84e7261e84d9d4bc6ce1ae674e *help/paths.rds
40bbef7256ce2a5228a7fbc708f2b046 *html/00Index.html
234aa9e5da402407088ebd26c06bc163 *html/CrisprRun-class.html
59791345751ff700205037e6d6047f27 *html/CrisprSet-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
5865dbdd8a6731180be895d8dc4ad12d *html/abifToFastq.html
790975f2a9a4894af086b9de1394bc05 *html/addClipped.html
3de510efa544c54564856365b4ce656a *html/addCodonFrame.html
b67a734cc8d5f99a94d517c65c63c370 *html/alleleLabelsHelpers.html
01dd5933bc45c84a79dba7178c225fd6 *html/alleles.html
a01a6bda3f9f573728f801d695d4bae8 *html/alns.html
d95c39be1419903eaff03dde30a5b885 *html/annotateGenePlot.html
5c1fe5e58bbc2bbb084a69977d29dd2a *html/arrangePlots.html
ee77ee5826fb3c690c2bd1dae06c5526 *html/barplotAlleleFreqs.html
0b4f8403c2a2f0a283d5ec5dc3b36607 *html/collapsePairs.html
40b6311726b5c486429271de1ea59b31 *html/consensusSeqs.html
ec455c0321b7bd9a2fe04e3a4c3ca47c *html/dispatchDots.html
12fb84d0d9039ad2bd60c58b20e2e4fe *html/excludeFromBam.html
6895416f65ee24cd5ebfdd4f8c53a1bf *html/explodeCigarOpCombs.html
560f5a3f3c2c09489db04b0155f30477 *html/findChimeras.html
70f4181eb0c2dd49ce751d1b3d2a3bba *html/findSNVs.html
c13dda2ff5d66c761331ad8d8e812698 *html/getAxisCoords.html
781daef8dbac8e517ff8dd8956822381 *html/getChimeras.html
2ed5dd5db2f64888ab2e0eb161a16b4a *html/getInsertionsTable.html
6fe7f958395d4cdbab13b2fe862b6b6f *html/gol_clutch1.html
2de7008419fa3afb91c0b317ed1f87bd *html/indelCounts.html
2f918f95a7f0a4276e7ad2f2161d94dd *html/indelLabels.html
a041c8067f288be495d77890a13ce6e6 *html/intersperse.html
31afb908888fffe3c284c2e648d1e0ae *html/makeAlignmentTilePlot.html
7657de983c449e9b3b47a553913a5729 *html/mergeChimeras.html
5b618192872e5ca5bb7bd7ac3b2bff8f *html/mergeCrisprSets.html
3899fefc0eddbf2072dd1348668e901f *html/mismatchLabels.html
0250bdefae256575b8742ba97e63ad15 *html/mutationEfficiency.html
9ad4da98fb3a6a80fd4a045513ce8949 *html/narrowAlignments.html
5dd8dd6d438df9f729e51cce6085f6c2 *html/plotAlignments.html
931b4b3cfa62aec35f5ad6dfae1a175b *html/plotChimeras.html
3ee5df4f83c67ed028775ed251e1fcc3 *html/plotFreqHeatmap.html
0b56c9ac74d6d5218cfbccac611cfb12 *html/plotVariants.html
26fa1f69093f577917bc100f7ca57b56 *html/rcAlns.html
5a8f8e9b583c369409a649f935af9566 *html/readTargetBam.html
5ee901342f3b15545cdc5d92ab3255ec *html/readsByPCRPrimer.html
f80069fa7f4e870860f0aa95274ec01f *html/readsToTarget.html
9f661438f954b281c863f47dabf03272 *html/refFromAlns.html
2762974d0dc31260452a56f8763c2a97 *html/reverseCigar.html
1877d710f908bd6e04c335ea4c3d8423 *html/rmMultiPCRChimera.html
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8cebef2876d7d61a4f2cbf9f81f26b51 *html/selectOps.html
5628bdf939744b18d135b5915ebb77f4 *html/seqsToAln.html
7f59e7260b5cf7607b671970cbb7e99c *html/setDNATileColours.html
b2fcb6dfda9c9933939badff4bc37ea1 *html/setMismatchTileColours.html
1c253c4e318506a1d98317287f95c7ed *html/transformAlnsToLong.html
8e6fd98090dde4ab2110d4ce9442e87a *html/variantCounts.html
002ac61c4435aec968ed16ba4f95b447 *html/writeFastq.html
