plot_heatmap_scExp {ChromSCape}R Documentation

Plot cell correlation heatmap with annotations

Description

Plot cell correlation heatmap with annotations

Usage

plot_heatmap_scExp(
  scExp,
  name_hc = "hc_cor",
  corColors = (grDevices::colorRampPalette(c("royalblue", "white", "indianred1")))(256),
  color_by = NULL
)

Arguments

scExp

A SingleCellExperiment Object

name_hc

Name of the hclust contained in the SingleCellExperiment object

corColors

A palette of colors for the heatmap

color_by

Which features to add as additional bands on top of plot

Value

A heatmap of cell to cell correlation, grouping cells by hierarchical clustering.

Examples

data("scExp")
plot_heatmap_scExp(scExp)
[Package ChromSCape version 1.0.0 Index]