b53715e440020e8cf2cee2f1e588342f *DESCRIPTION
0014e77731c11256b108bc3707cc3431 *INDEX
0d12a9d57ddfe33c9985baa643720508 *Meta/Rd.rds
af784a6bd140fe23f41a2b435ff50951 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
a0779ac157c9b9d091226dadda8459da *Meta/hsearch.rds
bcfacdbca81a30eed7d1f891db89370c *Meta/links.rds
df71c0b48208d24bf77dc83ea1c5dd0a *Meta/nsInfo.rds
e1db5b942baa959fbab9e3cbbc2a3c58 *Meta/package.rds
2c2441e88022858d5f22417dac8ce1ba *Meta/vignette.rds
29095468f4dc7b00db6b52292cb0e977 *NAMESPACE
3a5fbb3686117c9533c9649b898fb26c *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/Biostrings
2722baa2eba73fb7ede6757b451a9383 *R/Biostrings.rdb
b3a3f3af2e425d9f991d75b1b6022dfa *R/Biostrings.rdx
fb21544885b0d8e223dc707a19f703a6 *data/BLOSUM100.rda
370ae409745a34652b50f6c0992a7c36 *data/BLOSUM45.rda
ff21fdf7ae6c26d41265485e06678c47 *data/BLOSUM50.rda
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
ec70a69370ee7b924a1521bd22a0b92a *data/BLOSUM80.rda
4bb649b15a1c70fdc6beb4ea37ca8d58 *data/HNF4alpha.rda
b85025df056de88ad4e0ec260b4fbd3e *data/PAM120.rda
d790bbcef52f77bdbac03ca4fe317a0d *data/PAM250.rda
5ab6a6fb04f2bb2011c96abdea970b87 *data/PAM30.rda
d234baa0914f6233478aa0687fdbe10c *data/PAM40.rda
8533b9535b841e231b9babd78d584885 *data/PAM70.rda
d1f902614de1a9eba90d8387690c2688 *data/phiX174Phage.rda
ea5bd4d16695006aab9061c351649bb6 *data/srPhiX174.rda
e566417a897993c19e4b81e517778b6c *data/yeastSEQCHR1.rda
e919d958d2d4591086ade82640727b72 *doc/Biostrings2Classes.R
d7f69eedb9db937ef0b727cd1d558b8d *doc/Biostrings2Classes.Rnw
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865d1bbb87a1c74c54539c6482016f15 *doc/BiostringsQuickOverview.Rnw
6b4922368211f3e91e89aeafe46264d7 *doc/BiostringsQuickOverview.pdf
ebaaf15e9ad9332cc13c3b3a26b47c8a *doc/MultipleAlignments.R
61f53dbee2860c3e5cd6924d8e158129 *doc/MultipleAlignments.Rnw
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7d038597048fefbc1cbd6ce356a58696 *doc/matchprobes.R
b239f15493ac1bc5ab95d1afd25a2b28 *doc/matchprobes.Rnw
3cd666866e5bb77056f7781715e3363a *doc/matchprobes.pdf
78e8db3ebcbc095287e6fd8ccfe0e1a2 *extdata/Phylip.txt
fce14be25eab8521b6ee474b4c36a7df *extdata/README
24604bc9ec4790d5d590a623edea5548 *extdata/Sc.fa
1a6fe1b8caec191eb16265cc5b1d7563 *extdata/Sp.fa
11861abec072717c887a753e28f05f56 *extdata/dm3_upstream2000.fa.gz
cfea9d61b851d60768c0751e17ab9937 *extdata/fastaEx.fa
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76897b4820e1ed23b787a171ae4d3b5a *extdata/hg18chrY_gap.txt
3f5e79e34a204b72bb52b2e5d2b79f19 *extdata/msx2_mRNA.aln
23770dfd9eb85ab715b4cc28268bbc42 *extdata/s_1_sequence.txt
6210f3d073b676bc7bed60172a72c3e3 *extdata/someORF.fa
2fc0b8e9625d6ebebf8fca9cb7737ebd *extdata/someORF.fa.gz
788e0091c27a05c793a206a46e47109e *help/AnIndex
1bec3f31cfe2a178faa9038921eeb391 *help/Biostrings.rdb
324acdcc5209d51837fc297eea4ab193 *help/Biostrings.rdx
e44945c0e72bc7c727d010a8b7ad9d2f *help/aliases.rds
733fa7fd4be6955b1b1e2d6cb4a1adf0 *help/paths.rds
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db585d800c7d1828e1374aa0b0ac0211 *html/AAString-class.html
dc6333d0f6eff2521c84dfa48d34e368 *html/AMINO_ACID_CODE.html
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4f6db6fbafaf1a09ff328f243e9119b3 *html/DNAString-class.html
32d2057c4f1780df0156d8c75c150e40 *html/GENETIC_CODE.html
057073150ef17ea907dfc023bb870e0d *html/HNF4alpha.html
898faee7cd60f0f119e844e72caef263 *html/IUPAC_CODE_MAP.html
437618b02bec6507d526eca36907622c *html/InDel-class.html
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7e4ad16a4decbd1f3f71ee8c6b94cb5d *html/PairwiseAlignments-io.html
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18d0cd829cfd17b2bc0d58733866bb6c *html/XString-class.html
476dd72f4b8e3b75cbc9f7b6859ceed3 *html/XStringPartialMatches-class.html
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9c0d1470120c72bc1da23f85c3a82b13 *html/XStringSetList-class.html
98782c310e71f6f9c7e8e19378d674bd *html/XStringViews-class.html
10471c0f173171ed34c6ecee4434b898 *html/align-utils.html
910ae9a5b3a225c9176c757060f11ecf *html/chartr.html
326b429d595b7eae9ec0dc3f19025dac *html/detail.html
e1cc0b87e40fa09bf44632795b2cebb3 *html/dinucleotideFrequencyTest.html
081d75f78f52629f08d160893fee00ad *html/findPalindromes.html
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a4b3eae2cafd5bde19f49b5dbad03d61 *html/gregexpr2.html
04b7c13a73dd6d7e119c0b7887713471 *html/injectHardMask.html
c817be4f7dd17f8d3f47fbcb486c6655 *html/letter.html
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e2eca47513bb5e9b076fa88cc0de52dd *html/longestConsecutive.html
e9335bec6970d75678b8f493b6ef97dc *html/lowlevel-matching.html
bf292cb95f1fc5f07ebaa02140f389c0 *html/maskMotif.html
1185f42335d3f3c3487716ec626d8619 *html/match-utils.html
6aefae7794014c361938731450cac83b *html/matchLRPatterns.html
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6c657950474eb64e4595a48d0af196df *html/matchPattern.html
0ce2772617a13704c529b2811c1b540c *html/matchProbePair.html
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3adaa03b858a77be6a4dac1ea498c8f2 *html/misc.html
dd8bcac0494854011e1efefb463f41d8 *html/needwunsQS.html
d08fed37368b1ee044c30bdc2e92fe33 *html/nucleotideFrequency.html
7b6c4c706b3adf7facef06db94ee4179 *html/padAndClip.html
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56fc53304e43779cffa971dbc08853d8 *html/phiX174Phage.html
0a23bfec4703fd3bcff9356e9f7202e8 *html/pid.html
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2e013f6b509e67593471c27d50171442 *html/replaceAt.html
c6a0ab068e24ef934ae1ea4e252a9953 *html/replaceLetterAt.html
a1c26f0a785ba9cd494058e28663b0c0 *html/reverseComplement.html
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e6a735c0a9e95b40d70d7c1a28b59df7 *html/substitution_matrices.html
02f3f134633216f000b90818279c3b9d *html/toComplex.html
0693f416b2fad61d884979bed4d396ca *html/translate.html
d7435909a04e497b745a9f1402dfb2c4 *html/trimLRPatterns.html
3a38c9e42e9431515a133d8022e2cb5c *html/xscat.html
6fd45c6eb9eb04ca85912a5550815a55 *html/yeastSEQCHR1.html
018adb74d849e8af2c0137070a885e7a *include/Biostrings_defines.h
85307fa7cb5fde749d8691637f311f74 *include/Biostrings_interface.h
f0863ead2abb45524e2a2074c9a8eee7 *include/_Biostrings_stubs.c
1005e36eaff3080a8cff233aa14e23df *libs/i386/Biostrings.dll
b046c00af55a14dbebd9cb11de748303 *libs/x64/Biostrings.dll
16f044e2cdb85f2d44f501610554df57 *unitTests/test_MultipleAlignment.R
1437c2c15ae9d298a46c40bdc46455f9 *unitTests/test_XString.R
3005f58f4f937842a2813c4cb40f2c6f *unitTests/test_XStringSet.R
46c6cf375691dccb047582d39ca71bef *unitTests/test_XStringSetList.R
c6fed7d62d87e8fd0fd23f978a072ba9 *unitTests/test_findPalindromes.R
5a4fe6582d86f20f68c627d1efd511c0 *unitTests/test_matchDNAPattern.R.FIXME
0371bd65424b6b0160dd18f537333cc0 *unitTests/test_matchPDict.R
81024370010e243c14bd882b4cb9a727 *unitTests/test_pairwiseAlignment.R
407a2929d7f9fce74bd30e731a492477 *unitTests/test_twoWayAlphabetFrequency.R
