plot_MCI_Simulation {BioTIP} | R Documentation

## Plot observed and simulated MCI Scores

### Description

Box plots of observed (red) and simulated MCI scores by boostraping genes `B` times, with three horizontal lines: the min, max and 2*(max-min) value of the state of interests, or all all values.

### Usage

    plot_MCI_Simulation(
      MCI,
      simulation,
      las = 0,
      order = NULL,
      ylim = NULL,
      main = NULL,
      which2point = NULL,
      ...
    )

### Arguments

`MCI` | A named vector of max CI scores per state, can be obtained from function `getMaxStats`.
`simulation` | A matrix state * number of simulated times, can be obtained from function `simulationMCI`.
`las` | Numeric in 0, 1, 2, 3; the style of axis labels. Default is 0, meaning labels are parallel. (link to http://127.0.0.1:21580/library/graphics/html/par.html)
`order` | A vector of state names in the customized order to be plotted, set to NULL by default.
`ylim` | An integer vector of length 2. Default is NULL.
`main` | A character vector. The title of the plot. Default is NULL.
`which2point` | A character (or integer) which state's values were used to set up the three horizontal lines. by default is NULL, indicating the values of all states will be used.
`...` | Other parameters passed to this function

### Value

Return a box plot of MCI(red) and simulated MCI(grey) scores per state.

### Author(s)

Zhezhen Wang zhezhen@uchicago.edu

### Examples

    MCI = c(1:3); names(MCI) = c('a', 'b', 'c')
    simMCI = matrix(sample(1:100, 9), 3, 3)
    row.names(simMCI) = names(MCI)
    plot_MCI_Simulation(MCI, simMCI)

[Package BioTIP version 1.4.0 Index]