getCTS {BioTIP} | R Documentation

## Obtain the identified BioTiP and its length

### Description

getCTS obtains the identified BioTiP and its length based off of MCI scores.

### Usage

    getCTS(maxMCI, maxMCIms)

### Arguments

`maxMCI` | A numeric vector, whose length is the number of states. This parameter is the maximum MCI score of each state, and it can be obtained from the output of `getMaxStats`. Names need to be included in names of `maxMCIms`.
`maxMCIms` | A list of character vectors per state. The vectors are network nodes (e.g. transcript ids). This parameter is the second element of the output of the function `getMaxMCImember`.

### Value

A character vector, in which the elements are the unique IDs of the network nodes of the BioTiP.

### Author(s)

Antonio Feliciano y Pleyto and Zhezhen Wang zhezhen@uchicago.edu

### Examples

    maxMCI <- c(a = 2.56,  b = 8.52,  c = 2.36,  d = 4.81,  e = 5.26)
    maxMCIms <- list(a = c("A100",  "A293",  "C403"),
                     b = c("B853",  "D826",  "A406"),
                     c = c("J198",  "D103",  "B105"),
                     d = c("K529",  "D385",  "E358"),
                     e = c("J019",  "U926",  "N824"))
    identical(names(maxMCI),  names(maxMCIms))
    # TRUE
    getCTS(maxMCI,  maxMCIms)
    # "Length: 3"
    # "B853" "D826" "A406"

[Package BioTIP version 1.4.0 Index]