.get_velocity_files	dot-get_velocity_files
annots_from_fa_df	annots_from_fa_df
annots_from_fa_GRanges	annots_from_fa_df
annot_circular	annot_circular
cellranger_biotypes	cellranger_biotypes
check_char1	check_char1
check_genome	check_genome
check_gff	check_gff
check_tag_present	check_tag_present
check_tx	check_tx
dl_transcriptome	dl_transcriptome
EC2gene	EC2gene
ensembl_gene_biotypes	ensembl_gene_biotypes
ensembl_gff_mcols	ensembl_gff_mcols
ensembl_gtf_mcols	ensembl_gtf_mcols
ensembl_tx_biotypes	ensembl_tx_biotypes
get_inflection	knee_plot
get_intron_flanks	get_intron_flanks
get_knee_df	knee_plot
get_velocity_files	get_velocity_files
get_velocity_files,character-method	get_velocity_files
get_velocity_files,EnsDb-method	get_velocity_files
get_velocity_files,GRanges-method	get_velocity_files
get_velocity_files,TxDb-method	get_velocity_files
knee_plot	knee_plot
make_sparse_matrix	make_sparse_matrix
match_style	match_style
read_count_output	read_count_output
read_velocity_output	read_velocity_output
refseq_gff_mcols	refseq_gff_mcols
save_tr2g_bustools	save_tr2g_bustools
sort_tr2g	sort_tr2g
species2dataset	species2dataset
standardize_tags	standardize_tags
subset_annot	subset_annot
subset_annot,BSgenome-method	subset_annot
subset_annot,DNAStringSet-method	subset_annot
sub_annot	sub_annot
tr2g_EnsDb	tr2g_EnsDb
tr2g_ensembl	tr2g_ensembl
tr2g_fasta	tr2g_fasta
tr2g_gff3	tr2g_gff3
tr2g_GRanges	tr2g_GRanges
tr2g_gtf	tr2g_gtf
tr2g_junction	tr2g_junction
tr2g_TxDb	tr2g_TxDb
transcript2gene	transcript2gene
validate_velocity_input	validate_velocity_input
write_velocity_output	write_velocity_output
