# Generated by roxygen2: do not edit by hand

export("as.table<-")
export("events<-")
export("gene.table<-")
export("gtf<-")
export("network<-")
export("pathway.table<-")
export("psi<-")
export("samples<-")
export(ASpediaFI)
export(analyzeFI)
export(annotateASevents)
export(as.table)
export(events)
export(exportNetwork)
export(gene.table)
export(gtf)
export(network)
export(pathway.table)
export(psi)
export(quantifyPSI)
export(samples)
export(visualize)
exportClasses(ASpediaFI)
exportMethods("as.table<-")
exportMethods("events<-")
exportMethods("gene.table<-")
exportMethods("gtf<-")
exportMethods("network<-")
exportMethods("pathway.table<-")
exportMethods("psi<-")
exportMethods("samples<-")
exportMethods(as.table)
exportMethods(events)
exportMethods(gene.table)
exportMethods(gtf)
exportMethods(network)
exportMethods(pathway.table)
exportMethods(psi)
exportMethods(samples)
import(GenomicAlignments)
import(GenomicFeatures)
import(SummarizedExperiment)
import(ggplot2)
import(grid)
import(igraph)
import(methods)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(DRaWR,RWR)
importFrom(DRaWR,threeCol2MaxMat)
importFrom(DRaWR,threeCol2listMat)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesListFromDataFrame)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(Gviz,AnnotationTrack)
importFrom(Gviz,DataTrack)
importFrom(Gviz,GeneRegionTrack)
importFrom(Gviz,feature)
importFrom(Gviz,plotTracks)
importFrom(IRanges,IRanges)
importFrom(IVAS,chrseparate)
importFrom(IVAS,findAlternative)
importFrom(Matrix,colSums)
importFrom(Matrix,t)
importFrom(ROCR,performance)
importFrom(ROCR,plot)
importFrom(ROCR,prediction)
importFrom(Rsamtools,ScanBamParam)
importFrom(S4Vectors,elementMetadata)
importFrom(S4Vectors,subjectHits)
importFrom(biomaRt,select)
importFrom(dplyr,filter)
importFrom(e1071,impute)
importFrom(fgsea,fgsea)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(limma,strsplit2)
importFrom(mGSZ,geneSetsList)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(reshape2,melt)
importFrom(rtracklayer,import.gff)
importFrom(scales,hue_pal)
importFrom(stats,aggregate)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(utils,data)
