# Generated by roxygen2: do not edit by hand

S3method("[", MArrayLM2)
export("[.MArrayLM2")
export(ESS)
export(calcVarPart)
export(canCorPairs)
export(classifyTestsF)
export(colinearityScore)
export(dream)
export(extractVarPart)
export(fitExtractVarPartModel)
export(fitVarPartModel)
export(getContrast)
export(getVarianceComponents)
export(ggColorHue)
export(plotCompareP)
export(plotContrasts)
export(plotCorrMatrix)
export(plotCorrStructure)
export(plotPercentBars)
export(plotStratify)
export(plotStratifyBy)
export(plotVarPart)
export(sortCols)
export(varPartConfInf)
export(voomWithDreamWeights)
exportClasses(MArrayLM2)
exportClasses(VarParCIList)
exportClasses(VarParFitList)
exportClasses(varParFrac)
exportClasses(varPartResults)
exportMethods(ESS)
exportMethods(as.data.frame)
exportMethods(as.matrix)
exportMethods(calcVarPart)
exportMethods(classifyTestsF)
exportMethods(eBayes)
exportMethods(fitExtractVarPartModel)
exportMethods(fitVarPartModel)
exportMethods(plotVarPart)
exportMethods(residuals)
exportMethods(sortCols)
exportMethods(topTable)
import(Biobase)
import(colorRamps)
import(doParallel)
import(foreach)
import(ggplot2)
import(gplots)
import(iterators)
import(limma)
import(lme4)
import(methods)
import(pbkrtest)
import(progress)
import(reshape2)
import(splines)
import(utils)
importFrom(BiocParallel,bpiterate)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpparam)
importFrom(MASS,ginv)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,hcl)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(lme4,VarCorr)
importFrom(lme4,lmerControl)
importFrom(pbkrtest,get_SigmaG)
importFrom(reshape2,melt)
importFrom(scales,rescale)
importFrom(stats,anova)
importFrom(stats,approxfun)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,cancor)
importFrom(stats,coef)
importFrom(stats,cov2cor)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,fitted.values)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,order.dendrogram)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,pf)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qf)
importFrom(stats,qnorm)
importFrom(stats,qt)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,residuals)
importFrom(stats,sd)
importFrom(stats,terms)
importFrom(stats,var)
importFrom(stats,vcov)
