rcpp_naive {srnadiff} | R Documentation

## Compute naive method.

### Description

Compute naive method.

### Usage

    rcpp_naive(lengths, values, chromosomeSizes, depth, distance, size)

### Arguments

`lengths` | the sizes of the RLEs (one list per chromosome)
`values` | the values of the RLEs (one list per chromosome)
`chromosomeSizes` | the sizes of the chromosomes
`depth` | minimum number of reads per position
`distance` | threshold to merge consecutive regions
`size` | minimum region size

### Value

the unique counts

[Package srnadiff version 1.5.0 Index]