mabsGO {signatureSearch} | R Documentation

## MeanAbs Enrichment Analysis for GO

### Description

MeanAbs enrichment analysis with GO terms.

### Usage

    mabsGO(
      geneList,
      ont = "BP",
      OrgDb,
      keyType = "SYMBOL",
      nPerm = 1000,
      minGSSize = 5,
      maxGSSize = 500,
      pvalueCutoff = 0.05,
      pAdjustMethod = "BH"
    )

### Arguments

`geneList` | named numeric vector with gene SYMBOLs in the name slot decreasingly ranked by scores in the data slot.
`ont` | one of "BP", "MF", "CC" or "ALL"
`OrgDb` | OrgDb
`keyType` | keytype of gene
`nPerm` | permutation numbers
`minGSSize` | integer, minimum size of each gene set in annotation system
`maxGSSize` | integer, maximum size of each gene set in annotation system
`pvalueCutoff` | pvalue cutoff
`pAdjustMethod` | pvalue adjustment method

### Value

`feaResult` object

### Author(s)

Yuzhu Duan

### Examples

    data(targetList)
    #mg <- mabsGO(geneList=targetList, ont="MF", OrgDb="org.Hs.eg.db",
    #             pvalueCutoff=1)
    #head(mg)

[Package signatureSearch version 1.0.4 Index]