runShinyMethyl {shinyMethyl} | R Documentation

## Run the interactive shinyMethyl session

### Description

Function to run the interactive shinyMethyl session from a shinyMethylSet.

### Usage

    runShinyMethyl(shinyMethylSet1, shinyMethylSet2 = NULL)

### Arguments

`shinyMethylSet1` | `shinyMethylSet` that must be extracted from an `RGChannelSet`
`shinyMethylSet2` | optional `shinyMethylSet` that must be extracted from an `GenomicRatioSet`

### Value

No value returned. Instead the shinyMethyl interactive session is launched.

### Author(s)

Jean-Philippe Fortin

### See Also

`shinyMethylSet`

### Examples

    ## Not run:
    if (require(minfiData)){
      baseDir <- system.file("extdata", package = "minfiData")
      targets <- read.450k.sheet(baseDir)
      targets$Sample_Plate <- substr(targets$Slide,1,7)
      RGSet <- read.450k.exp(base = baseDir, targets = targets)

      summarized.data <- shinySummarize(RGSet)
      runShinyMethyl(summarized.data)
    }

    ## End(Not run)

[Package shinyMethyl version 1.22.0 Index]