test_tool_cwlrun {sevenbridges} | R Documentation

## Test tools with cwl-runner

### Description

Test tools locally cwl-runner (https://github.com/common-workflow-language/cwltool)

### Usage

    test_tool_cwlrun(rabix_tool, inputs = list())

### Arguments

`rabix_tool` | rabix tool from Tool class
`inputs` | input parameters declared as json (or yaml) string

### Value

cwl-runner stdout

### Examples

    ## Not run:
    inputs <- '{"counts_file": {"class": "File", "path": "./FPKM.txt"}, "gene_names": "BRCA1"}'
    rbx <- <define rabix tool>
    set_test_env("tengfei/testenv", "<mount_dir>")
    test_tool_cwlrun(rbx, inputs)

    ## End(Not run)

[Package sevenbridges version 1.16.1 Index]