SOSResult-class {rsbml} | R Documentation

## SOSResult

### Description

A result from simulating an `SOSExperiment`. Contains the time course for each of the model variables: the `Species` quantities, `Compartment` sizes, `Parameter` values, and `Reaction` rates.

### Slots

`data`:

  A `"data.frame"` containing the time course data. Each row contains the value at a single time point for a single time course. Has the following columns:

  `sample`

    A factor, the run number, only exists if there were multiple runs, see `SOSDesign`.

  `type`

    A factor, the SBML element type for the time course, e.g. `"species"`.

  `id`

    A factor, the `id` of the SBML element for the time course.

  `time`

    The numeric time value for the time point.

  `value`

    The actual numeric value for the time course at that time.

`sens`:

  A `"matrix"` with results from sensitivity analysis, not yet supported.

### Extends

Class `"ExperimentResult"`, directly.

### Methods

as.ts

  `signature(x = "SOSResult")`: converts this object to a time course object of class `ts`. This allows analysis of the results with existing R infrastructure for time course analysis.

compartments

  `signature(object = "SOSResult")`: returns a subset containing only the `Compartment` size courses.

parameters

  `signature(object = "SOSResult")`: returns a subset containing only the global `Parameter` value courses.

reactions

  `signature(object = "SOSResult")`: returns a subset containing only the `Reaction` rate courses.

species

  `signature(object = "SOSResult")`: returns a subset containing only the `Species` quantity courses.

### Author(s)

Michael Lawrence

### References

See http://www.tbi.univie.ac.at/~raim/odeSolver/ for more information on the SBML ODE Solver library.

### See Also

`SOSExperiment` for running a simulation and obtaining an instance of this class.

[Package rsbml version 2.44.0 Index]