Reaction-class {rsbml} | R Documentation

## SBML type "Reaction"

### Description

Any transformation, transportation or binding process that changes the quantity of one or more `Species`.

### Instantiation

Objects can be created by calls of the form `new("Reaction", ...)`.

### Slots

`id`:

  Object of class `"character"` uniquely identifying this component.

`name`:

  Object of class `"character"` naming this component.

`reactants`:

  Object of class `"list"` containing `SpeciesReference`s specifying the `Species` that are reactants for this reaction. The names of the list correspond to the IDs of the species.

`products`:

  Object of class `"list"` containing `SpeciesReference`s specifying the `Species` that are products for this reaction. The names of the list correspond to the IDs of the species.

`modifiers`:

  Object of class `"list"` containing `ModifierSpeciesReference`s specifying the `Species` that are modifiers for this reaction. The names of the list correspond to the IDs of the species.

`kineticLaw`:

  Object of class `"KineticLaw"` that dynamically defines the rate of the reaction.

`reversible`:

  Object of class `"logical"` indicating whether the direction of this reaction is reversible.

`fast`:

  Object of class `"logical"` indicating whether this reaction should be considered instantaneous relative to non-fast reactions.

`metaId`:

  Object of class `"character"` that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the `annotation` element.

`notes`:

  Object of class `"character"` containing user-readable XHTML notes about an element.

`annotation`:

  Object of class `"character"` containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.

`cvTerms`:

  Object of class `"list"` containing instances of `CVTerm` associated with this element.

`sboTerm`:

  Object of class `"integer"` identifying a term in the Systems Biology Ontology (SBO).

### Extends

Class `"SBase"`, directly.

### Methods

id

  `signature(object = "Reaction")`: gets the `id` slot

id<-

  `signature(object = "Reaction")`: sets the `id` slot

name

  `signature(object = "Reaction")`: gets the `name` slot

name<-

  `signature(object = "Reaction")`: sets the `name` slot

fast

  `signature(object = "Reaction")`: gets the `fast` slot

fast<-

  `signature(object = "Reaction")`: sets the `fast` slot

kineticLaw

  `signature(object = "Reaction")`: gets the `kineticLaw` slot

kineticLaw<-

  `signature(object = "Reaction")`: sets the `kineticLaw` slot

modifiers

  `signature(object = "Reaction")`: gets the `modifiers` slot

modifiers<-

  `signature(object = "Reaction")`: sets the `modifiers` slot

products

  `signature(object = "Reaction")`: gets the `products` slot

products<-

  `signature(object = "Reaction")`: sets the `products` slot

reactants

  `signature(object = "Reaction")`: gets the `reactants` slot

reactants<-

  `signature(object = "Reaction")`: sets the `reactants` slot

reversible

  `signature(object = "Reaction")`: gets the `reversible` slot

reversible<-

  `signature(object = "Reaction")`: sets the `reversible` slot

### Author(s)

Michael Lawrence

### References

http://sbml.org/documents/

[Package rsbml version 2.44.0 Index]