rnaseqcomp-class {rnaseqcomp} | R Documentation

## rnaseqcomp

### Description

This is a S4 class to organize data ready for benchmark summarization. There are 5 S3 objects inside this class. `quantData` documents a list of data matrices ready for evaluation by functions `plotSD`, `plotNE`, `plot2TX` or `plotROC`. `condInfo` is a factor corresponding to columns of `quantData` matrices, indicating to which cell lines each sample belongs. `repInfo` is a factor corresponding to columns of `quantData` matrices indicating replicate information. `repInfo` is a legacy from previous versions, and doesn't have too much meanings in current version. `refMed` is the median log2 signal of calibration references. `scaler` is a number that point to the median log2 signal of reference pipeline. `refMed` and `scaler` were used to calibrate and generate `quantData`.

[Package rnaseqcomp version 1.16.0 Index]