riboData-class {riboSeqR} | R Documentation

## Class "riboData"

### Description

The `riboData` class contains a list of GRanges objects containing ribosome footprint alignment data, a factor defining the replicate structure of the samples involved, and (optionally) a list of GRanges objects containing RNA-seq alignment data (paired with the ribosome footprint data). It will generally be created by the ‘readRibodata’ function and not directly by the user.

### Slots

`riboGR`:

  List of `"GRanges"` objects (one for each sequenced sample) describing the alignments of ribosomal footprint data to a transcriptome.

`rnaGR`:

  List of `"GRanges"` objects (one for each sequenced sample, paired with ‘riboGR’ slot) describing the alignments of RNA-seq data to a transcriptome.

`replicates`:

  A factor defining the replicate structure of the samples for which data are held. Replicate samples will have the same level in this factor.

### Methods

No methods are currently defined for this class.

### Author(s)

Thomas J. Hardcastle

[Package riboSeqR version 1.20.0 Index]