IlluminaBodymap {rgsepd} | R Documentation

## Sample RNA-Seq Counts data

### Description

A collection of counts datasets from Illumina Human Bodymap 2.0, one sample each for adipose, blood, heart and skeletal_muscle. Four technical replicates are created by downsampling the original Illumina data. Alignment was performed by Ensembl, so the source of this dataset is ftp://ftp.ensembl.org/pub/release-70/bam/homo_sapiens/genebuild . Each of the four Human Bodymap samples are downsampled four times. Read counts are collected with Bedtools CoverageBed and a RefSeq exon annotation.

### Usage

    data(IlluminaBodymap)

### Format

A data frame with 37653 observations on the following 16 variables.

`adipose.1`

  Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.

`adipose.2`

  Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.

`adipose.3`

  Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.

`adipose.4`

  Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.

`blood.1`

  Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.

`blood.2`

  Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.

`blood.3`

  Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.

`blood.4`

  Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.

`heart.1`

  Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.

`heart.2`

  Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.

`heart.3`

  Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.

`heart.4`

  Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.

`skeletal_muscle.1`

  Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.

`skeletal_muscle.2`

  Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.

`skeletal_muscle.3`

  Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.

`skeletal_muscle.4`

  Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.

### Value

A numeric matrix of read-counts from RNA-Seq, measured at transcripts by coverageBed.

### Source

http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-513/

### References

Illumina Human Bodymap 2.0. Ensembl etc.

### Examples

    data(IlluminaBodymap)
    head(IlluminaBodymap,30)

[Package rgsepd version 1.18.0 Index]