Package: regionReport
Type: Package
Title: Generate HTML or PDF reports for a set of genomic regions or
        DESeq2/edgeR results
Version: 1.20.1
Date: 2020-03-16
Authors@R: c(person("Leonardo", "Collado-Torres", role = c("aut", "cre"), email
    = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person(c("Andrew", "E."), "Jaffe", role = "aut",
    email = "andrew.jaffe@libd.org", comment = c(ORCID = "0000-0001-6886-1454")),
    person(c("Jeffrey", "T."), "Leek", role = c("aut", "ths"),
    email = "jtleek@gmail.com", comment = c(ORCID = "0000-0002-2873-2671")))
Description: Generate HTML or PDF reports to explore a set of regions such as
    the results from annotation-agnostic expression analysis of RNA-seq data at
    base-pair resolution performed by derfinder. You can also create reports for
    DESeq2 or edgeR results.
License: Artistic-2.0
LazyData: true
URL: https://github.com/leekgroup/regionReport
BugReports: https://support.bioconductor.org/t/regionReport/
VignetteBuilder: knitr
biocViews: DifferentialExpression, Sequencing, RNASeq, Software,
        Visualization, Transcription, Coverage, ReportWriting,
        DifferentialMethylation, DifferentialPeakCalling,
        ImmunoOncology
Depends: R(>= 3.2)
Imports: BiocStyle (>= 2.5.19), derfinder (>= 1.1.0), DEFormats,
        DESeq2, GenomeInfoDb, GenomicRanges, knitcitations (>= 1.0.1),
        knitr (>= 1.6), knitrBootstrap (>= 0.9.0), methods, RefManageR,
        rmarkdown (>= 0.9.5), S4Vectors, SummarizedExperiment
Suggests: BiocManager, biovizBase, bumphunter (>= 1.7.6), derfinderPlot
        (>= 1.3.2), sessioninfo, DT, DESeq, edgeR, ggbio (>= 1.13.13),
        ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap,
        RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/regionReport
git_branch: RELEASE_3_10
git_last_commit: 79e1a7b
git_last_commit_date: 2020-03-16
Date/Publication: 2020-03-16
NeedsCompilation: no
Packaged: 2020-03-17 02:22:44 UTC; biocbuild
Author: Leonardo Collado-Torres [aut, cre]
    (<https://orcid.org/0000-0003-2140-308X>),
  Andrew E. Jaffe [aut] (<https://orcid.org/0000-0001-6886-1454>),
  Jeffrey T. Leek [aut, ths] (<https://orcid.org/0000-0002-2873-2671>)
Maintainer: Leonardo Collado-Torres <lcolladotor@gmail.com>
Built: R 3.6.3; ; 2020-03-17 13:52:57 UTC; windows
