kmer_count {qckitfastq} | R Documentation

## Return kmer count per sequence for the length of kmer desired

### Description

Return kmer count per sequence for the length of kmer desired

### Usage

    kmer_count(infile, k, output_file = NA)

### Arguments

`infile` | the object that is the path to gzippped FASTQ file
`k` | the length of kmer
`output_file` | File to save plot to. Default NA.

### Value

kmers counts per sequence

### Examples

    infile <- system.file("extdata", "10^5_reads_test.fq.gz",
        package = "qckitfastq")
    km<-kmer_count(infile,k=4)
    km[1:20,1:10]

[Package qckitfastq version 1.2.0 Index]