findxnextneighbors {pwOmics} | R Documentation

## Find next neighbors of transcription factors in identified pathways. Produces a list of x next neighbors for each transcription factor in the pathway.

### Description

Find next neighbors of transcription factors in identified pathways.

Produces a list of x next neighbors for each transcription factor in the pathway.

### Usage

    findxnextneighbors(data_omics, pws_morex_TFs, pwxTFs, order_neighbors)

### Arguments

`data_omics` | OmicsData object.
`pws_morex_TFs` | list of transcription factors in identified pathways.
`pwxTFs` | numeric variable of pathway currently investigated (from pws_morexTFs).
`order_neighbors` | integer specifiying the order of the neighborhood: order 1 is TF plus its immediate neighbors.

### Value

list of x next neighbors for each TF in the pathway.

[Package pwOmics version 1.18.0 Index]