create_eset_r {puma} | R Documentation

## Create an ExpressionSet from a PPLR matrix

### Description

This is really an internal function called from pumaComb. It is used to create an `ExpressionSet` object from the output of the bcomb function (which was originally part of the pplr package. Don't worry about it!

### Usage

    create_eset_r(
    	eset
    ,	r
    ,	design.matrix=createDesignMatrix(eset)
    )

### Arguments

`eset` | An object of class `ExpressionSet`. The phenotype information from this is used as the phenotype information of the returned object
`r` | A data frame with components named 'M1', 'M2', and so on, which represent the mean expression values for condition 1, condition 2, and so on. It also has components named 'Std1', 'Std2', and so on, which represent the standard deviation of the gene expression values for condition 1, condtion 2, and so on. This type of data frame is output by function `bcomb` and `hcomb`
`design.matrix` | A design matrix.

### Value

An object of class `ExpressionSet`.

### Author(s)

Richard D. Pearson

### See Also

Related methods `bcomb`, `hcomb`, `pumaComb` and `pumaCombImproved`

[Package puma version 3.28.0 Index]