loadAnnotation {psichomics}R Documentation

Load alternative splicing annotation from AnnotationHub

Description

Load alternative splicing annotation from AnnotationHub

Usage

loadAnnotation(annotation, cache = NULL)

Arguments

annotation

Character: annotation to load

cache

Character: directory path of cache (if NULL, default location is AnnotationHub::getAnnotationHubOption("CACHE"))

Value

List of data frames containing the alternative splicing annotation per event type

See Also

Other functions for PSI quantification: filterPSI(), getSplicingEventTypes(), listSplicingAnnotations(), plotRowStats(), quantifySplicing()

Examples

human <- listSplicingAnnotations()[[1]]
## Not run: 
annot <- loadAnnotation(human)

## End(Not run)
[Package psichomics version 1.12.1 Index]