parseMisoEvent {psichomics} | R Documentation

## Parse an alternative splicing event from MISO

### Description

Parse an alternative splicing event from MISO

### Usage

    parseMisoEvent(event)

### Arguments

`event` | Data.frame containing only one event with at least 7 columns as retrieved from the alternative splicing annotation files from MISO (GFF3 files)

### Details

More information about MISO available at http://miso.readthedocs.org

### Value

List with event attributes and junction positions for the exons (depends on the events)

### Examples

    # example of alternative splicing event: skipped exon (SE)
    event <- read.table(text = "
      chr1 SE gene 16854 18061 . - .
      chr1 SE mRNA 16854 18061 . - .
      chr1 SE exon 16854 17055 . - .
      chr1 SE exon 17233 17742 . - .
      chr1 SE exon 17915 18061 . - .
      chr1 SE mRNA 16854 18061 . - .
      chr1 SE exon 16854 17955 . - .
      chr1 SE exon 17915 18061 . - .")
    psichomics:::parseMisoEvent(event)

[Package psichomics version 1.12.1 Index]