listSplicingAnnotations {psichomics} | R Documentation

## List alternative splicing annotations

### Description

List alternative splicing annotations

### Usage

    listSplicingAnnotations(species = NULL, assembly = NULL, date = NULL)

### Arguments

`species` | Character: filter results by species (regular expression)
`assembly` | Character: filter results by assembly (regular expression)
`date` | Character: filter results by date (regular expression)

### Value

Named character vector with splicing annotation names

### See Also

Other functions for PSI quantification: `filterPSI()`, `getSplicingEventTypes()`, `loadAnnotation()`, `plotRowStats()`, `quantifySplicing()`

### Examples

    listSplicingAnnotations() # Return all alternative splicing annotations
    listSplicingAnnotations(assembly="hg19") # Search for hg19 annotation
    listSplicingAnnotations(assembly="hg38") # Search for hg38 annotation
    listSplicingAnnotations(date="201(7|8)") # Search for 2017 or 2018 annotation

[Package psichomics version 1.12.1 Index]