subset_GR_GL_common_top {profileplyr} | R Documentation

## Redundant code wrapped into subsetbyRangeOverlap() or subsetbyGeneListOverlap() functions

### Description

Redundant code wrapped into subsetbyRangeOverlap() or subsetbyGeneListOverlap() functions

### Usage

    subset_GR_GL_common_top(object, overlap, input_names, type,
      separateDuplicated)

### Arguments

`object` | A profileplyr object
`overlap` | hits object from subsetByOverlap function
`input_names` | names of either the gene list of the granges that go into function
`type` | Either "GR" for subsetbyRangeOverlap() function or "GL" for subsetbyGeneListOverlap() function
`separateDuplicated` | A logical argument, if TRUE then regions that overlap multiple inputs to 'GRanges' argument will be separated and made into their own group. All possible combinations of region overlaps will be tested, so it is not recommended to have more than 3 groups if this option is TRUE. If FALSE, then regions that overlap each individual 'GRanges' input will be in the output, and if one region overlaps multiple 'GRanges' inputs, then it will be duplicated in the output and will show up in the section for each group.

### Details

tbd

### Value

A list of profileplyr objects

[Package profileplyr version 1.2.0 Index]