proDA_package-package	proDA_package
$,proDAFit-method	cash-proDAFit-method
$<-,proDAFit-method	cash-proDAFit-method
%zero_dom_mat_mult%	grapes-zero_dom_mat_mult-grapes
.DollarNames.proDAFit	cash-proDAFit-method
.proDAFit	proDAFit-class
abundances	abundances
abundances,proDAFit-method	accessor_methods
accessor_methods	accessor_methods
as_replicate	as_replicate
coefficients	coefficients
coefficients,proDAFit-method	accessor_methods
coefficient_variance_matrices	coefficient_variance_matrices
coefficient_variance_matrices,proDAFit-method	accessor_methods
convergence	convergence
convergence,proDAFit-method	accessor_methods
design,proDAFit-method	accessor_methods
distance_sq	distance_sq
dist_approx	dist_approx
dist_approx,ANY-method	dist_approx_impl
dist_approx,proDAFit-method	dist_approx_impl
dist_approx,SummarizedExperiment-method	dist_approx_impl
dist_approx_impl	dist_approx_impl
dollar_methods	cash-proDAFit-method
feature_parameters	feature_parameters
feature_parameters,proDAFit-method	accessor_methods
generate_synthetic_data	generate_synthetic_data
hyper_parameters	hyper_parameters
hyper_parameters,proDAFit-method	accessor_methods
invprobit	invprobit
invprobit_fast	invprobit_fast
median_normalization	median_normalization
mply_dbl	mply_dbl
msply_dbl	mply_dbl
pd_lm	pd_lm
pd_lm.fit	pd_lm.fit
pd_row_f_test	pd_row_t_test
pd_row_t_test	pd_row_t_test
predict,proDAFit-method	predict-proDAFit-method
proDA	proDA
proDAFit-class	proDAFit-class
proDA_package	proDA_package
reference_level	reference_level
reference_level,proDAFit-method	accessor_methods
result_names	result_names
result_names,proDAFit-method	test_diff
test_diff	test_diff
