hgA {podkat} | R Documentation

## Artificial Human Chromosome for Testing Purposes

### Description

A `GRanges` object defining a minimalistic artificial human chromosome with 200,000 bp length

### Usage

    hgA

### Format

Real human genome-based examples would require the supply of massive data and would require lengthy computation times. Therefore, the examples supplied with this package are based on a small single-chromosome artificial genome. The `GRanges` object `hgA` provides a description of this artificial genome that can be used for further processing, e.g. by the `partitionRegions` function.

### Author(s)

Ulrich Bodenhofer bodenhofer@bioinf.jku.at

### References

http://www.bioinf.jku.at/software/podkat

### See Also

`GRanges`, `partitionRegions`

### Examples

    ## load data set
    data(hgA)

    ## display hgA
    show(hgA)
    genome(hgA)

    ## partition hgA into overlapping regions of length 10,000 bp
    partitionRegions(hgA, width=10000)

[Package podkat version 1.18.0 Index]