get_taxa {phyloseq} | R Documentation

## Returns all abundance values of sample `i`.

### Description

This is a simple accessor function for investigating a single sample-of-interest.

### Usage

    get_taxa(physeq, i)

    ## S4 method for signature 'otu_table'
    get_taxa(physeq, i)

    ## S4 method for signature 'phyloseq'
    get_taxa(physeq, i)

### Arguments

`physeq` | (Required). `otu_table-class`, or `phyloseq-class`.
`i` | (Required). A single sample for which you want to know the abundance of each species. Can be integer for index value, or sample name.

### Value

An integer vector of the abundance values for each species in `physeq` for sample `i`

### See Also

`get_sample` `taxa_names` `sample_names`

### Examples

    data(esophagus)
    sample_names(esophagus)
    get_taxa(esophagus, "B")

[Package phyloseq version 1.30.0 Index]