aggregateSamples	aggregateSamples
all_expn_data	all_expn_data
all_genes	all_genes
assignCellClusterNearestNode	assignCellClusterNearestNode
batchIDs	batchIDs
batchIDs<-	Phemd-methods
batchIDs<-,Phemd-method	Phemd-methods
bindSeuratObj	bindSeuratObj
celltypeFreqs	celltypeFreqs
celltypeFreqs<-	Phemd-methods
celltypeFreqs<-,Phemd-method	Phemd-methods
clusterIndividualSamples	clusterIndividualSamples
compareSamples	compareSamples
createDataObj	createDataObj
drawColnames45	drawColnames45
embedCells	embedCells
gaussianffLocal	gaussianffLocal
GDM	GDM
GDM<-	Phemd-methods
GDM<-,Phemd-method	Phemd-methods
generateGDM	generateGDM
getArithmeticCentroids	getArithmeticCentroids
getCellYield	getCellYield
getSampleCelltypeFreqs	getSampleCelltypeFreqs
getSampleHistsByCluster	getSampleHistsByCluster
getSampleSizes	getSampleSizes
groupSamples	groupSamples
heatmap_genes	heatmap_genes
identifyCentroids	identifyCentroids
monocleInfo	monocleInfo
monocleInfo<-	Phemd-methods
monocleInfo<-,Phemd-method	Phemd-methods
orderCellsMonocle	orderCellsMonocle
Phemd	Phemd
Phemd,ANY,ANY-method	Phemd-methods
Phemd,character,ANY-method	Phemd-methods
Phemd-class	Phemd
Phemd-methods	Phemd-methods
plotCellYield	plotCellYield
plotEmbeddings	plotEmbeddings
plotGroupedSamplesDmap	plotGroupedSamplesDmap
plotHeatmaps	plotHeatmaps
plotSummaryHistograms	plotSummaryHistograms
pooledCells	pooledCells
pooledCells<-	Phemd-methods
pooledCells<-,Phemd-method	Phemd-methods
printClusterAssignments	printClusterAssignments
rawExpn	rawExpn
rawExpn<-	Phemd-methods
rawExpn<-,Phemd-method	Phemd-methods
removeTinySamples	removeTinySamples
retrieveRefClusters	retrieveRefClusters
selected_genes	selected_genes
selectFeatures	selectFeatures
selectMarkers	selectMarkers
selectMarkers<-	Phemd-methods
selectMarkers<-,Phemd-method	Phemd-methods
seuratInfo	seuratInfo
seuratInfo<-	Phemd-methods
seuratInfo<-,Phemd-method	Phemd-methods
sNames	sNames
snames_data	snames_data
subsampledBool	subsampledBool
subsampledBool<-	Phemd-methods
subsampledBool<-,Phemd-method	Phemd-methods
subsampledIdx	subsampledIdx
subsampledIdx<-	Phemd-methods
subsampledIdx<-,Phemd-method	Phemd-methods
