reparseCachedESs {phantasus} | R Documentation

## Reparse cached expression sets from GEO.

### Description

The function should be used on phantasus version updates that change behavior of loading datasets from GEO. It finds all the datasets that were cached and runs 'getES' for them again. The function uses cached Series and other files from GEO.

### Usage

    reparseCachedESs(destdir, mirrorPath = "https://ftp.ncbi.nlm.nih.gov")

### Arguments

`destdir` | Directory used for caching loaded Series files from GEO database.
`mirrorPath` | URL string which specifies the source of matrices.

### Value

vector of previously cached GSE IDs

### Examples

    reparseCachedESs(destdir=tempdir())

[Package phantasus version 1.6.0 Index]