OPPARList-class {oppar} | R Documentation

## A S4 class for the output of OPPAR main function, opa.

### Description

A S4 class for the output of OPPAR main function, opa.

### Usage

    ## S4 method for signature 'OPPARList'
    show(object)

    ## S4 method for signature 'OPPARList'
    x$name

### Arguments

`object` | An object of type OPPARList
`x` | Object of type OPPARList.
`name` | Name of the slot to access.

### Value

returns the number of outlier features detected, the number of samples retained, and the parameters used to run the `opa` function

extracts slots from an object of type `OPPARList`.

### Methods (by generic)

- `show`: A show method for objects of class OPPARList

- `$`: A method to extract slots in `OPPARList`

### Slots

`profileMatrix`

  A matrix of 0, -1 and 1 representing outlier genes in samples

`upper.quantile`

  Numeric. The upper quantile cut-off for detection of outliers

`lower.quantile`

  Numeric. The lower quantile cut-off for detection of outliers

`group`

  A factor vector representing the group to which each sample belong

`.Data`

  matrix

[Package oppar version 1.14.0 Index]