99b9b8bbf47f5876d514712dc2e66cdc *CITATION
06462e938220907b4b7e1479ac50983d *DESCRIPTION
69d659a5a02b82481e1e9c46c3439cad *INDEX
b5b6bed06dd8ed68f00c26d0b4cede89 *LICENSE
0aab66b89bb929306e28cbaed420099d *Meta/Rd.rds
147764c80e3bee9bf27549f3cd4355b3 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
cb0984673435d7eaf9300ec432d27fa8 *Meta/hsearch.rds
2b835f7fd95ff0e806606298aa653105 *Meta/links.rds
7c38e08bc1a249a60c5e52556267dcca *Meta/nsInfo.rds
6537b29ef2ce1567ec3e6a6a45361aa5 *Meta/package.rds
345012bec99508a141ad07530125eae4 *Meta/vignette.rds
019cde5fc1c5780557e535712aa33e87 *NAMESPACE
e919410735a7ebb97c6ba3f88816f892 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ngsReports
8075425557aa2ed6a342215cc0bb8f35 *R/ngsReports.rdb
efd36bd23b373c0f8d0d2288cca1af2f *R/ngsReports.rdx
5e41e7c9c6ebc982b560995104b0c5f5 *data/Rdata.rdb
eb6940b6e11ba773bd67d593f8e07bba *data/Rdata.rds
74d4268c47430f81ea1251dc826ba12b *data/Rdata.rdx
ce9ae01268269ec7ecaac44004cbb4b2 *doc/index.html
b98c1cf04c11167f8f37f84913daf6dd *doc/ngsReportsIntroduction.R
6b96d1a74a175c32895ce117d712d7c8 *doc/ngsReportsIntroduction.Rmd
a7231383330918e89470d43485828670 *doc/ngsReportsIntroduction.html
7ea003cf0687f2973dd4ee09c2a7c83f *extdata/ATTG_R1_fastqc.zip
0a98f0d9503ccfd8cfb93d3cc95d5977 *extdata/ATTG_R2_fastqc.zip
0d85c5c772697bc5a7c288ffee3e2256 *extdata/Athaliana.TAIR10.tRNA.fasta
e80781206ef3633a57b4094203248d24 *extdata/CCGC_R1_fastqc.zip
9a7e40c7eb9a29fd04534480540411a4 *extdata/CCGC_R2_fastqc.zip
fdfa66f1b02cdc1958cc3f7f69a3eb8c *extdata/GACC_R1_fastqc.zip
174693f49bbf4b285c8a9d40970a37b3 *extdata/GACC_R2_fastqc.zip
90c8bbc76e20644b04476c222cf6e5e6 *extdata/Sample1.trimmomaticPE.txt
d45c0cca6db37d90d5160202e7ef86b6 *extdata/Sample1_Dedup_metrics.txt
2fc2db169e0ca415930c37197bd91364 *extdata/Sample2.trimmomaticSE.txt
1024c49c68e186f359e2d7ae718841c4 *extdata/adapterRemoval.settings
e2ae5378499594a79dfdb6e20386d800 *extdata/bowtie2PE.txt
10a62d19e6b8488a99d6c2cc74515142 *extdata/bowtie2SE.txt
90af8f8b1f5fda1519e75adc1cb2a8a5 *extdata/bowtiePE.txt
2bc4af3feae70827eb80dfea14dd0f21 *extdata/bowtieSE.txt
2c1c5adc01b24fb26a070fd78f51874b *extdata/cutadapt_full.txt
cabc9e13e8c30a1a834393ce5eb9541d *extdata/cutadapt_minimal.txt
09f810e543f2476422738651ba81b64a *extdata/errorTestingFiles/completelyEmpty.zip
6c2b775634a0007960d6383bb42ccce0 *extdata/errorTestingFiles/hello.txt.gz
ffcb4751ad11d80c72f622a4e360db41 *extdata/errorTestingFiles/moduleNamesNoData.zip
cb5fb1d6823d9c7f51e85fbe093ad21e *extdata/exampleRNASeq_R1_fastqc/fastqc_data.txt
8af993874204a8c34642cca06dc36ffd *extdata/exampleRNASeq_R1_fastqc/summary.txt
532495997f2eadb63acb67fad6fc78c6 *extdata/exampleRNASeq_R2_fastqc/fastqc_data.txt
605a6599c93a4dd77fa61720c4e51018 *extdata/exampleRNASeq_R2_fastqc/summary.txt
bafdc4a537a6ec54927e833a0815a6c2 *extdata/featureCounts.summary
194faf6ce8fbcb18212c33b293bfe808 *extdata/flagstat.txt
268e7f16693e1e3bf51669b5ce301fce *extdata/hisat2PE.txt
dcdab034b0c7261d3104253754d2249b *extdata/log.final.out
24bba0f7d5596bdcce3e4738e13e9427 *extdata/ngsReports_Fastqc.Rmd
1f25944e669616b540280f6137a6aaea *extdata/quast1.tsv
0a0606a39314f417e7f5d0b6c7c6911d *extdata/quast2.tsv
eb984742888a6756c8cc682e6464b861 *extdata/short_summary_Dmelanogaster_Busco.txt
80776602feff7d2d56124759cf89ed6e *help/AnIndex
5db9b74eacb09ae270a4d57be9bc390a *help/aliases.rds
b7754d848ad6b9842fdacd978f5971f8 *help/ngsReports.rdb
3e2f83f1ab75bfe432895bbcb8302402 *help/ngsReports.rdx
5dd68ed8b7992031892f6520bd165d83 *help/paths.rds
b9530df7af64a962fc83751576e6b416 *html/00Index.html
2e5eba27350b7eea3f67e37251fb4919 *html/FastqcData.html
c3e5268c665870ec3678268d470ef0f9 *html/FastqcDataList.html
3b6f3796eba30675cc979833a826f5a4 *html/PwfCols-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a6a616a4439987833d3c8919052e6c41 *html/TheoreticalGC-class.html
d67cce077a6adb8c5bcdecb29ce5ea2b *html/dot-FastqcFile-class.html
9dc6e7f43ed104d1cdff70019e109d4b *html/dot-addPercent.html
2f9d8393a3ca295a846911eae9475ee7 *html/dot-emptyPlot.html
97bd225526e4f87ce94dfb66a7c9e02e *html/dot-getToolName.html
146a5dcce8cc563118ba4becbc85f1ef *html/dot-hidePWFRects.html
dc77387e545d2441d00627ca1af289fe *html/dot-isValidAdapterRemovalLog.html
4523d862c0d72f1968c6e893fab031f5 *html/dot-isValidBowtieLog.html
b099a02012403bd2332ea1f798ee4fee *html/dot-isValidBuscoLog.html
84472ea6fec7386f7862d52eaa794b30 *html/dot-isValidCutadaptLog.html
e95b23723076b0ceee4973545383e275 *html/dot-isValidDuplicationMetricsLog.html
95bfa0214dc0c7c8c55e273cc17e991c *html/dot-isValidFeatureCountsLog.html
58e4a2a05bc862a57e71c067a1b7a643 *html/dot-isValidFlagstatLog.html
fa8d9e3b6646c599ea4a8094a025c2eb *html/dot-isValidHisat2Log.html
32f2d6115ac891aa2e2934740041f406 *html/dot-isValidQuastLog.html
88b950236057467837855a36d2f8a551 *html/dot-isValidStarLog.html
a6cc30db8507ac4e87515a4b8c513269 *html/dot-isValidTrimmomaticLog.html
fc833458c836c761e76a2eb8aee33f74 *html/dot-makeDendro.html
c4730f34a9aac33a5eb0c9bc4d71d6a3 *html/dot-makeLabels.html
7403957efc5aae531041d13cd67df647 *html/dot-makeSidebar.html
d9bac3f4376c0ebd97957783fc697d62 *html/dot-parseAdapterRemovalLogs.html
86eca6ab7bf8041074765629bbf58810 *html/dot-parseBowtieLogs.html
9d5f9c0a7fad4a666c35a9e62a6857c2 *html/dot-parseBuscoLogs.html
cc1704f2fd5f1d11e9b57fa00aa3c795 *html/dot-parseCutadaptLogs.html
c2cb3744dd115fc4df5f5fa2e3f0e5b2 *html/dot-parseDuplicationMetricsLogs.html
6b6fa1feb55b4e0e181ba09b096b0866 *html/dot-parseFeatureCountsLogs.html
5c7211d71f9e0a5b8a9806e07c70cfc5 *html/dot-parseFlagstatLogs.html
c04847a36aa554510430a77088e00dea *html/dot-parseHisat2Logs.html
57bed28e765bedf9f8515c9bf74949c0 *html/dot-parseQuastLogs.html
5449f0bb86ec7c2e322acebac3b2604c *html/dot-parseStarLogs.html
a78020a6c6292b95944b0c8718aa85f8 *html/dot-parseTrimmomaticLogs.html
3e20169cd6221c0d54b9981f5282402e *html/dot-renderDendro.html
cc93016445a54f93fabf360da3939234 *html/dot-scale_fill_pwf.html
a30c487165473e2bd4a762b087aa4263 *html/dot-splitByTab.html
976a36c5631707f15b175d362d6c1e5e *html/estGcDistn.html
2bfdafa6823f712cdbb3e6b0a202c86c *html/extract-methods.html
32af7e7c107352627c91bcfd078ef4ba *html/fqName-methods.html
0024f1438bfda217acea1425b4dca86f *html/fqcVersion.html
15b08efc00ca7bec8a39df57bf5274d6 *html/gcAvail.html
c2050bbe60bc1a4a0719e20805788b2f *html/gcTheoretical.html
8838d0c47f71bc064a566db76fb42ca7 *html/getColours-methods.html
3ac5373e994300a90a35ba5603cfb001 *html/getGC.html
b3c9f32126bcdbc0a84098f7c045fd2a *html/getModule.html
76d03b00043955e0c0b41b9ff6048df7 *html/getSummary.html
86bbf230a8d08e2007cd37a84138fa49 *html/importNgsLogs.html
36d06cc03129ca8455068a89f7135b95 *html/isCompressed.html
e20924ed3080c415a7108d3b7d7e8dee *html/mData.html
767932d8dfbfc2d39e237477999792b4 *html/maxAdapterContent.html
bca6b3985113a067b247679a4a4a6272 *html/overRep2Fasta-methods.html
925953ac7e795773d023088ebf61a031 *html/path.html
d5ca24d8b20fa51a8d323f907eee9886 *html/plotAdapterContent-methods.html
292b0dd297c8929956b6d28176d48d85 *html/plotAlignmentSummary.html
f484bc623eb4387efa3d1b0433a0da5d *html/plotAssemblyStats.html
a1093273cb3cb5858dd7cdfd28024212 *html/plotBaseQuals-methods.html
65dde03079f56b394277b07801fc5ee5 *html/plotDupLevels-methods.html
19e6a3ac105cf73c57c6a79085763fdd *html/plotFastqcPCA-methods.html
9b59cacf8d9b2cbec4547795812a9ab1 *html/plotGcContent-methods.html
73bd7f7213f1770e91fdaec5c11fbdeb *html/plotKmers-methods.html
09c49cee5c77d6d883f0544040fce254 *html/plotNContent-methods.html
923f9d4bf69771153d2d77bc2bdfc141 *html/plotOverrep-methods.html
51bf6d13c7334e69d46d2f87d51a2dfc *html/plotReadTotals-methods.html
2c0b002ef9a4ecf4b5e26e7702f507da *html/plotSeqContent-methods.html
46d9e883b0bac0cf96f8e086beffdb71 *html/plotSeqLengthDistn-methods.html
2c8e8455b9b4d6224ca01d166d9d6cd5 *html/plotSeqQuals-methods.html
ece3a226e7ca5c4afcfebeaefae6c337 *html/plotSummary-methods.html
f33bd9ca5e6482920c2ba6cf3724e6df *html/pwf.html
cff88b794560573dc33d8cd5d227d22f *html/readTotals.html
5c81d7f828c29955cd45a7c1ccad2dc7 *html/runFastQC-methods.html
94373bcf6b3b48b296e8b41773ab21de *html/writeHtmlReport.html
