getData {methylKit} | R Documentation

## get the data slot from the methylKit objects

### Description

The functions retrieves the table containing methylation information from `methylKit` Objects. The data retrived from this function is of a `data.frame`. This is basically containing all relevant methylation information per genomic region or base.

### Usage

    getData(x)

    ## S4 method for signature 'methylBase'
    getData(x)

    ## S4 method for signature 'methylRaw'
    getData(x)

    ## S4 method for signature 'methylDiff'
    getData(x)

    ## S4 method for signature 'methylRawDB'
    getData(x)

    ## S4 method for signature 'methylBaseDB'
    getData(x)

    ## S4 method for signature 'methylDiffDB'
    getData(x)

### Arguments

`x` | an `methylBase`,`methylBaseDB`, `methylRaw`,`methylRawDB` or `methylDiff` object

### Value

data frame for methylation events

### Examples

    data(methylKit)

    # following commands show first lines of returned
    # data.frames from getData() function
    head(
    getData(methylBase.obj)
    )

    head( getData(methylDiff.obj))

    head(getData(methylRawList.obj[[1]]))

[Package methylKit version 1.12.0 Index]