createTranscriptTrack {methyAnalysis} | R Documentation

## Create a transcript annotation track

### Description

Create a transcript track, which is a GeneRegionTrack object

### Usage

    createTranscriptTrack(gene, genomicFeature = "TxDb.Hsapiens.UCSC.hg19.knownGene", lib = "org.Hs.eg.db",
    	genome = "hg19", extendRange = c(2000, 2000), includeOtherGene=FALSE, includeGeneBody = TRUE,
    	thinBox_utrOnly = FALSE, background.title = "gray", fill = "#8282d2", ...)

### Arguments

`gene` | An Entrez gene ID or a GRanges object with length equals one
`genomicFeature` | a TxDb library, TxDb object, or Mart object
`lib` | Entrez annotation library
`genome` | The version of genome
`extendRange` | extended range on each side of the gene
`includeOtherGene` | whether to include other genes in the same chromosome ranges, only useful when "gene" is a gene ID.
`includeGeneBody` | whether to include the whole gene body or not
`thinBox_utrOnly` | whether to only show UTRs as thin boxs in the plot
`background.title` | the background color of the title
`fill` | fill color for transcript track
`...` | other parameters

### Details

This function is to create a GeneRegionTrack object for visualization using Gviz package.

### Value

a GeneRegionTrack object

### Author(s)

Pan Du

### See Also

`plotTracks`, `plotTracksWithDataTrackInfo`, `heatmapByChromosome`, `plotMethylationHeatmapByGene`

### Examples

    if (require(TxDb.Hsapiens.UCSC.hg19.knownGene) && require(Gviz)) {
    	rangeTrack <- createTranscriptTrack('7157', genomicFeature = "TxDb.Hsapiens.UCSC.hg19.knownGene")
    	# plotTracks(rangeTrack)
    }

[Package methyAnalysis version 1.28.0 Index]