methrix_report {methrix} | R Documentation

## Creates a detailed interative html summary report from Methrix object

### Description

Creates a detailed interative html summary report from Methrix object. If the directory contains required files (from previous run), it directly proceeds to generate html report.

### Usage

    methrix_report(
      meth,
      output_dir = NULL,
      recal_stats = FALSE,
      plot_beta_dist = TRUE,
      beta_nCpG = 10000,
      prefix = NULL,
      n_thr = 4
    )

### Arguments

`meth` | `methrix` object
`output_dir` | Output directory name where the files should be saved. If `NULL` creats a `tempdir`
`recal_stats` | Whether summary statistics should be recalculated? If you are using subsetted methrix object set this to TRUE.
`plot_beta_dist` | Default TRUE. Can be time consuming.
`beta_nCpG` | Number of CpGs rto use for estimating beta value distribution. Default 10000
`prefix` | If provided, the name of the report and the intermediate files will start with the prefix.
`n_thr` | Default 4. Only used if `plot_beta_dist` is TRUE

### Value

an interactive html report

### Examples

    ## Not run:
    data('methrix_data')
    methrix::methrix_report(meth = methrix_data)

    ## End(Not run)

[Package methrix version 1.0.05 Index]