# GWAS Incorporating Networks

## Documentation for package ‘martini’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

evo | Run evo.
get_GI_network | Get gene-interaction network.
get_GM_network | Get gene membership network.
get_GS_network | Get genomic sequence network.
ldweight_edges | Include linkage disequilibrium information in the network.
minigwas | Description of the minigwas dataset.
minippi | PPIs for the minigwas dataset.
minisnpMapping | Genes for the minigwas dataset.
run_scones | Run shake.
scones | Find connected explanatory SNPs.
scones.cv | Find connected explanatory SNPs.
search_cones | Find connected explanatory SNPs.
simulate_causal_snps | Simulate causal SNPs
simulate_phenotype | Simulate phenotype
subvert | Vertices with an attribute