nr {manta} | R Documentation

## Print out all the normalization ratios for each subset in a specified taxinomic rank of a manta object

### Description

.

### Usage

    nr(obj, meta.lev, pair)

### Arguments

`obj` | A manta object.
`meta.lev` | which taxinomic rank to use for subset normalization estimation.
`pair` | A named vector of conditions factors

### Value

table of normalization ratios

### See Also

manta, meta2manta

### Examples

    manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta")
    load(manta.path)
    x <- calcNormFactors(x)

    conditions <- factor(x=1:2, labels=c('ambient','plusFe')); names(conditions) <- c('ref','obs')

    nr(x, meta.lev='genus_sp', pair=conditions)

[Package manta version 1.32.0 Index]