compbiasTest {manta} | R Documentation

## compositional bias test

### Description

.

### Usage

    compbiasTest(x, pair=nv(levels(x$samples$group)[1:2] , c('ref','obs')), meta.lev='phylum',  meta.lev.lim=min(10,nrow(x$meta.sum[[meta.lev]])))

### Arguments

`x` | a MANTA object.
`pair` | named vector of the pair of conditions of interest
`meta.lev` | which taxinomic level should this test be run at
`meta.lev.lim` | how many underlying taxinomic levels should the analysis be limited to

### Value

A DGEList object.

### See Also

DGEList, manta

### Examples

    manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta")
    load(manta.path)

    compbiasTest(x, meta.lev='genus_sp')

[Package manta version 1.32.0 Index]