plotCDF {lumi} | R Documentation

## plot the cumulative distribution function of a ExpressionSet object

### Description

plot the cumulative distribution function of a ExpressionSet object from high to low value or in reverse

### Usage

     plotCDF(x, reverse=TRUE, logMode=TRUE, xlab = NULL, ylab = "Cumulative density",
    	col=1:dim(x)[2], lwd=1, xlim = NULL, index.highlight = NULL, color.highlight = 2,
    	addLegend = TRUE, main="", ...)

### Arguments

`x` | a numeric or `ExpressionSet` object
`reverse` | determine whether plot the CDF from high to low value or not
`logMode` | determine whether the CDF plot is based on a log2 scale
`xlab` | xlab of the plotCDF plot
`ylab` | ylab of the plotCDF plot
`col` | line colors of the plotCDF plot
`lwd` | line width of plot function
`xlim` | parameter of the plot function
`index.highlight` | the column index of the highlighted plotCDF curve
`color.highlight` | color of highlighted plotCDF curve
`addLegend` | whether add legend to the plot or not
`main` | title for the plot
`...` | additional parameters for `plot.ecdf` function

### See Also

`LumiBatch-class`, `ecdf`

### Examples

    ## load example data
    data(example.lumi)

    plotCDF(example.lumi)

[Package lumi version 2.38.0 Index]