boxplotColorBias {lumi} | R Documentation

## Plot the Illumina Infinium methylation color bias in terms of boxplot

### Description

Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side

### Usage

    boxplotColorBias(methyLumiM, logMode = TRUE, channel = c("both", "unmethy", "methy", "sum"), grid = TRUE, main = NULL, mar = NULL, verbose = F, subset = NULL, ...)

### Arguments

`methyLumiM` | MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities
`logMode` | whether plot the intensities in log-scale
`channel` | estimate the intensity in different methods
`grid` | whether to add grid on the plot
`main` | title of the plot
`mar` | margin of the plot
`verbose` | whether print verbose information during plot
`subset` | plot subset of randomly selected rows. All data will be plotted if it is NULL.
`...` | other parameters of `boxplot`

### Details

Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side

### Value

Invisibly return TRUE if plot successfully.

### Author(s)

Pan DU

### See Also

See Also as `boxplot` and `plotColorBias1D`

### Examples

    data(example.lumiMethy)
    boxplotColorBias(example.lumiMethy)

[Package lumi version 2.38.0 Index]