PredictionProfile-class {kebabs} | R Documentation

## Prediction Profile Class

### Description

Prediction Profile Class

### Details

This class stores prediction profiles generated for a set of biological sequences from a trained model. Prediction profiles show the relevance of individual sequence positions for the prediction result.

### Slots

`sequences`

  sequence information for the samples with profiles

`baselines`

  baselines generated from the offset in the model spread
  to all sequence positions

`profiles`

  prediction profile information stored as dense matrix with
  the rows as samples and the columns as positions in the sample

`kernel`

  kernel used for training the model on which these prediction
  profiles are based

### Author(s)

Johannes Palme <kebabs@bioinf.jku.at>

### References

http://www.bioinf.jku.at/software/kebabs
J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

[Package kebabs version 1.20.0 Index]