46b5ced3517b929ab2fe4cae253054ed *CITATION
5a2cd15559e7e7881a04bca5bc484d85 *DESCRIPTION
a27543e4f018e7b35b2638ed8fdb14f4 *INDEX
c2496dc08bd2a84a27fe4244106f8377 *Meta/Rd.rds
60b86825c6a7c74a8b365b6f2589269f *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
4278271f62548aba46b70c3884bdf223 *Meta/hsearch.rds
f67b2a9509a7f44c3ad4cdfe7ccf5004 *Meta/links.rds
6b4e1055358319ba51ccbbd10d33e2cb *Meta/nsInfo.rds
0df29d790a90ad5c16a9464a479816f1 *Meta/package.rds
5ce29b837ca32d3c61db0a602d6c802f *Meta/vignette.rds
21d7f372069ba69a1a34e655352e3d04 *NAMESPACE
2507a5a02ee2af6b5995fb68b830916b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/isobar
75988e8863593cdfc37c8aa9d9be9c71 *R/isobar.rdb
0eeeaeb8f413b3c0b87313814f9ec48a *R/isobar.rdx
c7a5a70ebdebbb43c2e1ca9d1b0adee9 *data/datalist
b8b88836959bc4075f53f0c451dfe60b *data/ib_phospho.rda
0958cc4c886c489dda421ade8b7bddab *data/ibspiked_set1.rda
4a6ea3178279aefddcf6eb26f500e201 *data/ibspiked_set2.rda
20790378db1e8fc09a6ec329b91f2954 *data/noise.model.hcd.rda
163a311cc92f83bdf9f4c42e9128c9c5 *doc/index.html
3657e0dbdcb8fc8951e2fe604c35be02 *doc/isobar-devel.R
00750d7e0d90fea9eb3f348cb9735e75 *doc/isobar-devel.Rnw
029a1831e2c50ead40079b656dc8a5ef *doc/isobar-devel.pdf
138dec290f8cf6f67c252ca3c007dd16 *doc/isobar-ptm.R
314da331a6a3811b2af10802037391c8 *doc/isobar-ptm.Rnw
c580c3631d655cdae6f615cf68d8e18a *doc/isobar-ptm.pdf
9a8eca9752762ff7486109e91215953c *doc/isobar-usecases.R
545d3ef59ef5f85f4b4da438f31e3e86 *doc/isobar-usecases.Rnw
9502d78ea1e73d9b5df1990c7ebbb997 *doc/isobar-usecases.pdf
ff99a39074b7ca848618af2802a7cb15 *doc/isobar.R
0286bb554d231774371cc1860a6f9e6a *doc/isobar.Rnw
9832c881aa2083e6b401175b615a5805 *doc/isobar.pdf
67db5bcb1b2f3e7f10d8ac9f0fa01df4 *help/AnIndex
0c2132642d13f4604d77e004b98ac996 *help/aliases.rds
a337948f2b6d23e7cc4ec7208cbb5303 *help/isobar.rdb
658d8f22d022d2caa903133c5318ffd0 *help/isobar.rdx
e9fbe4253b411858d796f04ff331b3ed *help/paths.rds
319b9cd4107a2e21760d0dec4cf78f0e *html/00Index.html
e1e813aae71915e9269650e7f405f4d8 *html/IBSpectra-class.html
d35d6a188f5c84fcfec40ca94ea03d53 *html/NoiseModel-class.html
b8e1ebe3b0599e77800ff49f75dc3206 *html/ProteinGroup-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fb57086c90c5c52ffb7228053ea7c081 *html/TlsParameter-class.html
e75c6254fd1536344b616127ea1879ed *html/Tlsd-class.html
7d14a6d3518adeac35ce0c0694ddca4a *html/calc.delta.score.html
9f4c734fd6a0b1f43f2df6820cfd953a *html/calc.startpos.html
8391c04418b98f18649e1f2314c12a55 *html/calculate-pvalues.html
0aea194ad16738a00ac795bd2cfe399d *html/calculate.dNSAF.html
96055798a24dc35b281e9047d5b4d412 *html/calculate.emPAI.html
d38d2c23f122128f6fea0f6c9b932acd *html/correct.peptide.ratios.html
e1b87f979852e6b48311a897f50c159e *html/distr-methods.html
2830dc753efe810c85c6fc36780a70ad *html/fit-distr.html
f10deb900544dea58dd737ccade31dcc *html/getPeptideModifContext.html
0099da37e312c20f138b410f1dd44d58 *html/getPhosphoRSProbabilities.html
e6d464f0aaaacd834355c653f0e938c6 *html/getPtmInfo.html
7804a0f1915e8481ff97a00639badc6e *html/groupMemberPeptides.html
5a6afacaa63e2701dbd85dc2a44357c1 *html/human.protein.names.html
2ddd343f73dde776b6872984e01afc12 *html/isobar-analysis.html
ee1b3e52bab59e90a7656414d7e405fe *html/isobar-data.html
c7075d3d82a0aec1bded7a2c6f722ae3 *html/isobar-import.html
ff72ac96f377f4a2c8316e1e131e207f *html/isobar-log.html
d9d79e6d7842bd77b6c0d7e08087cb74 *html/isobar-package.html
d28ea8f15526d8f7569170a8d1e39687 *html/isobar-plots.html
4e95cbf7ce41d832479da76ba85590d1 *html/isobar-preprocessing.html
fe05a89afbada32c2c290f5986b23feb *html/isobar-reports.html
e9f363e4637ff0b19b26cb6a65a11c02 *html/maplot.protein.html
2c07d1758fc6670f912c8ecddd90deb1 *html/number.ranges.html
ad39eec7b81763f823248d62a7674f00 *html/observedKnownSites.html
f03388285f5ee79bc6a4fe6d96ff60d0 *html/peptide.count.html
6dad4c5f342ba3110deb5292dccd4887 *html/proteinInfo-methods.html
a65c4309973efaa0d8fcb8539a1d9aef *html/proteinNameAndDescription.html
b4fe9d63dd099fe5bd4fcd6eeace9c67 *html/ratio-summ.html
d320898cb59767f9af577d315b843638 *html/ratiosReshapeWide.html
204b42b8ea5e83c5048693f7ce21cd85 *html/reporter.protein-methods.html
08595cc6a47cdc94fe0a298eecf9cee0 *html/sanitize.html
2e0d55acc58a18f6f63edce826600223 *html/shared.ratios.html
2fb3088b8d589be6ee569db006618774 *html/shared.ratios.sign.html
018c71e705cca12ce535891733599f4b *html/specificities.html
894bc1d6a54362d3b33360b87dc8b8c9 *html/spectra.count2.html
7da0f0a431b03f1e815ce86432f7291e *html/subsetIBSpectra.html
81db11738942b6b761c77a45ce9e8cd9 *html/utils.html
ca63bbc28e0ae0dcd6f6268ffe36d934 *html/writeHscoreData.html
c4e5eaedf2f58c8ffd37386fcf9ea154 *html/writeIBSpectra.html
716d7b0757874cf8599448f4bee9810e *pl/mascotParser.ini
2cca5297323fc2a74017ecd7aea853c7 *pl/mascotParser2.pl
2584f52a48c4f9aa1f66a70a34f49ff9 *pl/mascotParserDelta_defunct.pl
1fd85c5cbbfe521feea3c2b7b58e6d41 *pl/modifconv.csv
161d85c51a7f2283c3d0b84e0429d1d7 *pl/msgfpParser.R
3228f3eec6684af3e5723965b9ea74fa *pl/parsersConfig.xml
91010e7dc5499a269a1afdecbaf810b9 *pl/pidresParser.ini
b2220fae9a1b8bc8bc6e7e00ab96f2da *pl/pidresParser2.pl
4cf5076ba456ba392fa144b2ae228e3a *pl/psx2tab2.pl
005ecccf798ee34040ca6d6219f47ee9 *pl/tab2psx.pl
4f2a0927cd8506c4eea0beef0120e954 *pl/tab2xls.pl
b602208b7fa19d3eb2368c7ce7bb5dfa *pl/tab2xlsx.pl
ce7394b1801aa8b2e9c3f89466c5e55f *report/create_ibspectra.R
847bd2f19c315fcef0d86ee5183c9fc8 *report/create_meta_report.R
1bb294af0062a7fdeffce36e51d3ee23 *report/create_proteingroup.R
0b83a654ee337fa19cc2468561549a6d *report/create_reports.R
4ac135db1b729216469fbb60408af484 *report/isobar-analysis.Rnw
4e4331c28fbbcfb0001d3dab0d66ee14 *report/isobar-qc.Rnw
b29144b3a608f3d62852d92b59aff480 *report/meta-properties.R
67028806951e58f04939bf9d42db0032 *report/properties.R
b272169b767e3f91437feb211b3b1c53 *report/report-utils.tex
