popCellPicker {imageHTS} | R Documentation

## Pop up imageHTS web modules

### Description

Pop up the imageHTS web modules cellPicker and webQuery, using the web browser.

### Usage

    popCellPicker(x, uname, spot, id.highlight, access='server', browse=TRUE)
    popWebQuery(x, access='server', browse=TRUE)

### Arguments

`x` | An imageHTS object.
`uname` | A character vector, containing the well names to annotate. See `getUnames` for details.
`spot` | An optional numeric vector, containing the spot indexes of the wells to annotate. If missing, only the first spot is used.
`id.highlight` | An optional numeric vector, containing the object indexes to highlight. If missing, no object is highlighted.
`access` | A character string indicating how to access the data. Valid values are `local`, `cache` and `server`, the default. See `fileHTS` for details.
`browse` | A logical indicating whether the web browser should be loaded. Default is `TRUE`.

### Details

cellPicker must be installed using `installCellPicker` before using `popCellPicker` on the local project directory. If present, the numeric vector `spot` must have the same length as `uname`.

webQuery must be installed using `installWebQuery` before using `popWebQuery` on the local project directory.

### Value

A character string containing the URL to access the cellPicker or the webQuery web module.

### Author(s)

Gregoire Pau, gregoire.pau@embl.de, 2010

### See Also

`installCellPicker`, `installWebQuery`, `getUnames`

### Examples

    ## initialize imageHTS object using the remote kimorph screen
    local = tempdir()
    server = 'http://www.ebi.ac.uk/huber-srv/cellmorph/kimorph/'
    x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server)

    if (interactive()) {
      popCellPicker(x, uname=c('002-02-A11', '001-01-C17'))
      popWebQuery(x)
    }

[Package imageHTS version 1.36.0 Index]