remove_nonstandard_chromosomes2d {idr2d} | R Documentation

## Removes Interactions on Non-standard Chromosomes

### Description

Removes Interactions on Non-standard Chromosomes

### Usage

    remove_nonstandard_chromosomes2d(x)

### Arguments

`x` | data frame of genomic interactions, with the following columns (position of columns matter, column names are irrelevant):
column 1: | `chr_a` | character; genomic location of anchor A - chromosome (e.g., `"chr3"`)
column 2: | `start_a` | integer; genomic location of anchor A - start coordinate
column 3: | `end_a` | integer; genomic location of anchor A - end coordinate
column 4: | `chr_b` | character; genomic location of anchor B - chromosome (e.g., `"chr3"`)
column 5: | `start_b` | integer; genomic location of anchor B - start coordinate
column 6: | `end_b` | integer; genomic location of anchor B - end coordinate
column 7: | `value` | numeric; p-value, FDR, or heuristic used to rank the interactions

### Value

`x` without non-standard chromosomes.

### Examples

    rep1_df <- remove_nonstandard_chromosomes2d(idr2d:::chiapet$rep1_df)

[Package idr2d version 1.0.4 Index]