c6eb6144e293458e18dc12eab92e73c6 *DESCRIPTION
02d87f7e5c00da059abe10b27e259326 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
e11765c384778b2a81c00e5c3f7149a0 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
fc31688543e2c1ab09bd852d0ce7532d *Meta/hsearch.rds
0b6945f1fa881990aecee77afe71e37f *Meta/links.rds
5ab0cab06ac7cdb7682def16d50bd17f *Meta/nsInfo.rds
1fd9f1ad7e0bfddd5527d150b6032532 *Meta/package.rds
3e89086866bc0c9acb330e42580ab89f *Meta/vignette.rds
d16a08dcb01db5d9628367e8ce4e09a0 *NAMESPACE
cbc7f6cb31ce547c75224498369a95eb *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/icetea
dacdba4c57dce59ae2e97298e61e78f7 *R/icetea.rdb
de40a768ce98c6b36c4de80cae7e0e39 *R/icetea.rdx
d81ababe1141aeea21b05124813d1e41 *doc/index.html
034e10cf6c41d3c1dae8cc3c27917fa1 *doc/mapcap_analysis.R
e9a45049b7fb37f1e1a3bec42fe17b45 *doc/mapcap_analysis.Rmd
6f8566773312247a86d0972b34f865dc *doc/mapcap_analysis.html
de8b916f9c226200f79c6f55feb85f55 *extdata/bam/embryo1.bam
91e831f3cd3c9f15a9cbc65a5256bdb2 *extdata/bam/embryo1.bam.bai
6f81004281be96947b0a7aec3fd708e9 *extdata/bam/embryo2.bam
d1a7d506ca48f8dfb57fdd27040e8f8f *extdata/bam/embryo2.bam.bai
6f6a1daa30ac3259ea3446b972abcb30 *extdata/bam/embryo3.bam
e9de33af380be5880cfac7aaec779d24 *extdata/bam/embryo3.bam.bai
aec2b788554ef9596a83903bf43de44e *extdata/bam/embryo4.bam
d8936a1cd8f09891df42ecc85f49424a *extdata/bam/embryo4.bam.bai
0c3c740f5e29282a59189275a59021fd *extdata/demult_fastq/embryo1_R1.fastq.gz
bb8a38293ae9c019a76ce993f1acd7ed *extdata/demult_fastq/embryo1_R2.fastq.gz
4b5ba8fca80d6db6eb9a806c1559e828 *extdata/demult_fastq/embryo2_R1.fastq.gz
260725b25ec4e7e437701e2e8f6a6537 *extdata/demult_fastq/embryo2_R2.fastq.gz
d454f40af936e291683c07234337c40b *extdata/demult_fastq/embryo3_R1.fastq.gz
2f4738c18f72cf9bbe1fbe8ac2bf3d2a *extdata/demult_fastq/embryo3_R2.fastq.gz
33836d593cf2d34191e6d9105c28a907 *extdata/demult_fastq/embryo4_R1.fastq.gz
66177ebfbe632de38653de30e626b104 *extdata/demult_fastq/embryo4_R2.fastq.gz
5892afab3371f7e667c4cd3ffa09f4c0 *extdata/filtered_bam/embryo1.filtered.bam
1d08ad34edc7c3dc9969510759247ac8 *extdata/filtered_bam/embryo1.filtered.bam.bai
2cd6075b990efdd8c87fae97df066e06 *extdata/filtered_bam/embryo2.filtered.bam
567e663f982757e1400a5dd3aefd6279 *extdata/filtered_bam/embryo2.filtered.bam.bai
76e22c135d7a09158387e33ca6d1ff9a *extdata/filtered_bam/embryo3.filtered.bam
3648e402b54371182c11737b521615b2 *extdata/filtered_bam/embryo3.filtered.bam.bai
f245afc12a17c7eff49f9d37f803ac72 *extdata/filtered_bam/embryo4.filtered.bam
c417c9d32ffbab6cfb1a11fc6996e409 *extdata/filtered_bam/embryo4.filtered.bam.bai
f9d63ca9f8a24353ec3282ace47b1a41 *extdata/mapcap_test_R1.fastq.gz
c501e7171f176d240536655600de70ed *extdata/mapcap_test_R2.fastq.gz
57e4621cc32dbcd98aac583bcbc152be *extdata/testTSS_grl.rds
2d25320c06c1ce89e17f5eac3b14db60 *extdata/testTSS_merged.bed
c438c1704a666d443a1e360b68a5cbfb *help/AnIndex
4d14fcc3e431867349c29063badf62dc *help/aliases.rds
c091143aa94070d77b2a1fab46182229 *help/icetea.rdb
e70724756cb6c432dd59b384ad453642 *help/icetea.rdx
18efa0ed822ff1340814deff8d7ea0a0 *help/paths.rds
5ce6fb6e5eb09e9ae7b44698619c1acb *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
04abd22b055fdfd9639903257136a1e5 *html/ResizeReads.html
9bc78af3458f3f2c25c2fe0e02bc0790 *html/activeChrs.html
8330e3fe82ef9715fc3c1cbc7a29040c *html/annotateTSS.html
b53d6c1f0236d0578742ce0d871d45eb *html/check_capSet.html
2d70dc420a4c697744db5cd32fbddf16 *html/demultiplexFASTQ.html
2c90c6ba759032b1e7488bf423d1b569 *html/detectDiffTSS.html
b6c9ec89b54e30328fd7581729ee8ae8 *html/detectTSS.html
df9a89024eca8e67bb3f7de83ebf1e16 *html/diffQCplots.html
e792a7cc6c32a917737d61159c85e076 *html/exampleCSobject.html
08e8dfc368923db49a0cd35178a1e89d *html/exportTSS.html
eb2430f01ebff54e344eec1524e18fbc *html/filterDuplicates.html
720679b44800d3179d988cfe9158975d *html/filterDups.html
bfcaf8425c3ac880b6eb58552ce840c5 *html/fitDiffTSS.html
dc7de2bba626150625e4b011e802e41d *html/getBamFlags.html
97c5a8d4c678625c536b2c339c8ffb86 *html/getChromBins.html
718d3ff7e0fa77133a2318a59b4c17b7 *html/getChromWindows.html
4679995b6f309077f608544089185f3c *html/getGeneCounts.html
4658dc75b1ac19d579b6ff3dedb4740d *html/getMCparams.html
df48559d77455e7da85f0aac10915917 *html/getNormFactors.html
35214b9f8066571f636ac8287802448d *html/get_newfastq.html
c72e5d978038124ed4f53ad32fbfd5b1 *html/getranks.html
3c7c3198b8d1d162422783c68b6a178a *html/mapCaps.html
906ee714e744c77573a8dd99f8164772 *html/newCapSet.html
f71554a469ff593fb6a4c57767c68c7f *html/numReadsInBed.html
b7c9f908c3d836fef2f38e2080af927b *html/plotPrecision.html
dbf6407eb6e705838e97ab8d1ecef6b0 *html/plotReadStats.html
e14b5132fd3303934b48fee246cdf0e6 *html/plotTSSprecision.html
8693985b03c2e8d9928caffc65840e43 *html/sampleInfo.html
3bbb12b67fdedeb471cd7f51467cf233 *html/splitBAM_byIndex.html
f7a8d11c94c9aaeab6982156876fb2d3 *html/splitBAM_byRepindex.html
a59e2ca8e59bb47fecddd865538998b7 *html/split_fastq.html
8a4642808d3d767299d6af1fad4c27cb *html/splitranks.html
a4e2a35cf7462c670122ec420f7b590f *html/strandBinCounts.html
