682077ea1fa350c2a2d5542d568a1475 *DESCRIPTION
fcda84403040fac05428d1906e231d2e *INDEX
a7642dfddc4340d4cc417db5f61ecabb *Meta/Rd.rds
3b3ee1842a3e946a0ecd037d386442c9 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
de3440e01034dc95c7fd0202289eff09 *Meta/hsearch.rds
aa5b58e206cd9f8fcbc560d387538303 *Meta/links.rds
45546faedad7c51020d478e7a613e93b *Meta/nsInfo.rds
380cf93bd824948f121975421fda2ed8 *Meta/package.rds
3821db976e4a1e702d0000337bd71516 *Meta/vignette.rds
666fdd11f3458d17815e4e8545f961d9 *NAMESPACE
68b329da9893e34099c7d8ad5cb9c940 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/iCNV
ff4a7e4c88367fb6080e01a5e01da8e7 *R/iCNV.rdb
520446efea5e33912399aeb649c8016f *R/iCNV.rdx
0b9f98d1bb6ef5521ac8ae95eaf9ba65 *data/Rdata.rdb
ac78c9d7ec414e073306ed58ede7e192 *data/Rdata.rds
6ce8c4c5754a254fff45e960733c8fe7 *data/Rdata.rdx
8f37b0f182ba9b0590028e9d0a1fc3aa *doc/iCNV-vignette.R
3ba5fcd3b757855cb3831443d1ecf089 *doc/iCNV-vignette.Rmd
8a61cfda3abd1bfdccc8d0da3549a72c *doc/iCNV-vignette.html
8bfec149e57e9791f37fc959ab504d7a *doc/index.html
0a0a1ad733f8f9c6b29da2c70858ad73 *extdata/NA06994.csv.arrayicnv
91eb603a625a52a86fad7e6dd010df7c *extdata/NA06994.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
c54fa02620ac6298be7e6696463d666b *extdata/NA10847.csv.arrayicnv
8ab2cb927225daca13e1a90cf96f491c *extdata/NA10847.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
27a9b50c6940482eb361c57ac6db3e3f *extdata/NA11840.csv.arrayicnv
28ec8043cbff15e51394115d0f1b0c63 *extdata/NA11840.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
487cd8ceab74411efe0631e739b364cd *extdata/NA12249.csv.arrayicnv
c0c418a0caf4ec10eb6dff69d0dacfc4 *extdata/NA12249.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
7af37b756b236a1a861a258a2d0187b9 *extdata/NA12716.csv.arrayicnv
e199d2b2923e92a945f9d512006c4d93 *extdata/NA12716.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
8bc8ab90f7d71c9bca534e0e4c1f4986 *extdata/NA12750.csv.arrayicnv
e8b04542d18826e70111adb0fc51b567 *extdata/NA12750.mapped.ILLUMINA.bwa.CEU.exome.20130415.bam.chr22.sorted.bam.vcf.gz.filter
3e011c79adfa83e8c2a00cf9dba42ccb *extdata/NA12751.csv.arrayicnv
6a0bc6dfe149db3d2781f74f9e934569 *extdata/NA12751.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
2aea3934454ab202cfa2b269544ff5bb *extdata/NA12760.csv.arrayicnv
cb3bdb72b27f6f3ace0b3cc8e3a4713b *extdata/NA12760.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
34189215121cd8e4f2a330582ca3a88a *extdata/NA12761.csv.arrayicnv
8e80a56703d4c6b62da3b6e7419cc87a *extdata/NA12761.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
5578eb73f09af6cbc6b543b4e2eeebe8 *extdata/NA12763.csv.arrayicnv
f415f991e32f9cf003b89eb7315fa600 *extdata/NA12763.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
ef64d7dcb6d203d085b50333b6698ecb *extdata/NA18966.csv.arrayicnv
2fcaa5948be84279ce739d27da99d2e4 *extdata/NA18966.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
0c2a953dd9349422875f628444eff5a2 *extdata/NA18967.csv.arrayicnv
ec89827cdb8e4af7f552f4769de4663c *extdata/NA18967.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
0ab1a79bf998a7feb9cbc7898924cd17 *extdata/NA18968.csv.arrayicnv
32fd3ecc129f371c2a9f79da5b2d6a69 *extdata/NA18968.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
5f7d162f029bda909ce24269f7e2d6e9 *extdata/NA18969.csv.arrayicnv
fd769ebb1ca258b928a2de43e717047e *extdata/NA18969.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
c23353dcb0853084cb8417ba09d5eca6 *extdata/NA18970.csv.arrayicnv
99791fc1eda44af8a899e46d9eb2b93b *extdata/NA18970.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
f454f365ea9673df3ff66dad3916647c *extdata/NA18971.csv.arrayicnv
87236184fd7d920de9d789063388f1f4 *extdata/NA18971.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
667d128e597ffa0caf7d2aa2434d1c5a *extdata/NA18972.csv.arrayicnv
8c7f5c769044aa2439b26d11738946a7 *extdata/NA18972.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
582839cb7f7c59cd1b008ec6843307cf *extdata/NA18973.csv.arrayicnv
e24a870465869e9b0e135e383a6e7ee0 *extdata/NA18973.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
ea0a91291d7fb18d1e03d182038555cb *extdata/NA18974.csv.arrayicnv
527b3b597517c7c08a8194950ae10a35 *extdata/NA18974.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
4c3437bbf998dffe1ee47e70e3e2200f *extdata/NA18975.csv.arrayicnv
a0f661e49d5acf76281ec7c579aaaa27 *extdata/NA18975.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
61e541017537d46c601de2a92ba7d69b *extdata/NA18976.csv.arrayicnv
3a5ce5a8acff217fc02523f28529e07e *extdata/NA18976.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
e59df68061b25f84d5144f0ae5f66530 *extdata/NA18981.csv.arrayicnv
7293d9c3ac8e54ed9953c2f370359d61 *extdata/NA18981.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
82bd4cd35f3d9efd4687e15318554e5a *extdata/NA18987.csv.arrayicnv
3f73a10e6d6e58cb2e298bf968b377f2 *extdata/NA18987.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
23859ae82a5b9697ca5648d5f8ee8735 *extdata/NA18990.csv.arrayicnv
5c006553e8d92dcf12d878aa430eed57 *extdata/NA18990.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
39488ace2c504e6b02ed7e70f0149648 *extdata/NA18991.csv.arrayicnv
f0ed3ff8aee0074c67157f3f929a6914 *extdata/NA18991.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
6d9c1014bf1ec83ae2ad25f7d6a7c8eb *extdata/NA19098.csv.arrayicnv
eb42881b28d1d9b95c529f9eaffbf14e *extdata/NA19098.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
a55983e5287258d5a77c34f2a95cc560 *extdata/NA19119.csv.arrayicnv
5149302a55375ac41f2a0be089c77965 *extdata/NA19119.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
1cc27ca2258830e938f6abd125e38aa7 *extdata/NA19131.csv.arrayicnv
89fbdc88ec08be8cfad6df55466c4d23 *extdata/NA19131.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
60340dde6715b181e0a8cd99ef412b4e *extdata/NA19137.csv.arrayicnv
ce1962e4d22a9635a800267c553cb34e *extdata/NA19137.mapped.ILLUMINA.bwa.YRI.exome.20130415.bam.chr22.sorted.bam.vcf.gz.filter
c7aa55b11b03b3a296997bbf01949db5 *extdata/NA19138.csv.arrayicnv
e79ede7abc2434888399c787930d974d *extdata/NA19138.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
14611ea98b920725a76e2c3f54552ade *extdata/NA19141.csv.arrayicnv
3bdb742a7f4e2d04377ece93999055d6 *extdata/NA19141.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
e427bd051167e272fa8dd034ffe2162c *extdata/NA19143.csv.arrayicnv
141ea2d3b408358905d94e502a4a074b *extdata/NA19143.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
aeb71bf4f5690820f351890ad484b453 *extdata/NA19144.csv.arrayicnv
3f8a1d886f3e47586bb46410c783822c *extdata/NA19144.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
141658f657c968d785fb930097488443 *extdata/NA19152.csv.arrayicnv
02efa134f2145763b0c8e5638e4f4827 *extdata/NA19152.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
21b7c70979722bc9dd9f27db4a191f1f *extdata/NA19153.csv.arrayicnv
a1faeebbe61b573a63bb4f3c6dc4a0b8 *extdata/NA19153.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
1ed6026c469edd98e0e2385e3903bfba *extdata/NA19159.csv.arrayicnv
6a927a8cfa3fadad913ae2fa27a0eafc *extdata/NA19159.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
b423d6a0f908c47b949b6ffdba694c5c *extdata/NA19160.csv.arrayicnv
a04a9f35e77cd6372d05b245b3bef7aa *extdata/NA19160.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
a8bfdfde1ecc3bb2d5265ffb74a00787 *extdata/NA19171.csv.arrayicnv
fbdc410473c84c206d2611d073b24b3a *extdata/NA19171.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
03ae2c44ea9113327740e6f6e40ee370 *extdata/NA19200.csv.arrayicnv
b7fa742887840083396f6a2dd43a2410 *extdata/NA19200.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
36bed17d0605495b2ab7c63da7be04d4 *extdata/NA19201.csv.arrayicnv
ad5310b30a9773dd0c5bc4d9078f5ed3 *extdata/NA19201.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
424a99fa60c5c47c8ff464a81bb104f0 *extdata/NA19204.csv.arrayicnv
720110fe363f8837a9d75d13e8e62d24 *extdata/NA19204.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
fe2e662d0d5144dbcef58edfe0606356 *extdata/NA19206.csv.arrayicnv
36459f5783fc30f385117d9900b69835 *extdata/NA19206.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
154a3c2e3d56b0a6e5e3c1a5f966d171 *extdata/NA19207.csv.arrayicnv
6629682ecfb08921b53a729d011bed3e *extdata/NA19207.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
ca2d0884b0e5c3ec4e73c1b1e21b75f1 *extdata/NA19209.csv.arrayicnv
4a5d9ba7eb675ba298431b1505a3915d *extdata/NA19209.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
202e481d9af840090d84ef99f9d31742 *extdata/NA19210.csv.arrayicnv
af982cdc97864a6c5aa19f1acfb8c4e5 *extdata/NA19210.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
db731c3919a7370334a472e5fd00754e *extdata/NA19223.csv.arrayicnv
498a2e1d5f70033559d6da4044bb14b0 *extdata/NA19223.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
df2f0b26eb0a28a4cbbd76a69dfc0b98 *extdata/bam_vcf.list
04c18d556aa6e49d9ce1d7ee8d3df73d *help/AnIndex
0644cdd25484d6850a7babcc3cb6ebfe *help/aliases.rds
a537dddd6432a905a5b92d9215970f85 *help/iCNV.rdb
3f1b077cefedc0d713e033a0f2ef706e *help/iCNV.rdx
0431c098cb3396f6fe9c8c9dca7b3ad0 *help/paths.rds
4c0985deb3ec8686b0e433d760e564bf *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7d9b784e32d7736a374f0cde89e24e6b *html/bambaf_from_vcf.html
2c0453c499b26bea884fd4e597f561d5 *html/bed_generator.html
6437e5a27f468899322a11072de2ba5a *html/chr.html
b483520b437ddeff7bd047e53d77d0c8 *html/filenm.html
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1b100fdba73b48f6b08eafd334eff0dc *html/icnv_output_to_gb.html
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03b1cc949ba8b7f2d45d399984cfe1f1 *html/ngs_baf.chr.html
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2fa60418cd39d57db5e8e804326604af *html/ngs_baf.pos.html
4045d8b89aa2f9f0edce41463a7f2925 *html/ngs_plr.html
a39c4ed405c93f39fff370a36cbf62b0 *html/ngs_plr.pos.html
af4bcca9b04059347135f75ab65c83b7 *html/normObj.html
03719ff7e41e3e8d55e2276126352b07 *html/output_list.html
e7749fb3a691ebafe983206a3a6af189 *html/plotHMMscore.html
6a5aae8be1bf8ed19600691c26c27e68 *html/plot_intensity.html
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7341a6b85f9a82f06ed63f4a26e8b892 *html/projname.html
5a462572490847e00dbedb3c3679c22e *html/qcObj.html
fb9430d672b2ac654e6e58429c292d45 *html/sampname.html
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