top_pathways {hipathia} | R Documentation

## Computes pathway significance

### Description

Performs a test for each pathway checking if the number of significant paths is significant, compared to not having any of the paths as significant.

### Usage

    top_pathways(comp)

### Arguments

`comp` | Comparison data frame as returned by the `do_wilcoxon` function.

### Value

Table with the names of the pathways and their p-value for the Fisher test comparing the proportion of significant subpaths vs. 0.

### Examples

    data(comp)
    top_pathways(comp)

[Package hipathia version 2.2.1 Index]