visualize_report {hipathia} | R Documentation

## Visualize a HiPathia report

### Description

Visualize a HiPathia report

### Usage

    visualize_report(output_folder, port = 4000)

### Arguments

`output_folder` | Folder in which results to visualize are stored
`port` | Port to use

### Value

The instructions to visualize a HiPathia report in a web browser

### Examples

    data(comp)
    pathways <- load_pathways(species = "hsa", pathways_list = c("hsa03320",
    "hsa04012"))
    report <- create_report(comp, pathways, "save_results")
    visualize_report(report)

    ## Not run:
    data(results)
    data(brca)
    sample_group <- colData(brca)[,1]
    colors_de <- node_color_per_de(results, pathways,
    sample_group, "Tumor", "Normal")
    report <- create_report(comp, pathways, "save_results",
    node_colors = colors_de)
    visualize_report(report)
    visualize_report(report, port = 5000)

    ## End(Not run)

[Package hipathia version 2.2.1 Index]