evaluateHMMInAnnotations {groHMM} | R Documentation

## evaluateHMM Evaluates HMM calling.

### Description

Evaluates HMM calling of transripts compared to known annotations.

### Usage

    evaluateHMMInAnnotations(tx, annox)

### Arguments

`tx` | GRanges of transcripts predicted by HMM.
`annox` | GRanges of non-overlapping annotatoins.

### Value

a list of error information; merged annotations, dissociated annotation, total, and rate.

### Author(s)

Minho Chae

### Examples

    tx <- GRanges("chr7", IRanges(start=seq(100, 1000, by=200),
    width=seq(100, 1000, by=100)), strand="+")
    annox <- GRanges("chr7", IRanges(start=seq(110, 1100, by=150),
    width=seq(100, 1000, by=150)), strand="+")
    error <- evaluateHMMInAnnotations(tx, annox)

[Package groHMM version 1.20.0 Index]