countMappableReadsInInterval {groHMM} | R Documentation

## countMappableReadsInInterval counts the number of mappable reads in a set of genomic features.

### Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

### Usage

    countMappableReadsInInterval(features, UnMap, debug = FALSE, ...)

### Arguments

`features` | A GRanges object representing a set of genomic coordinates. The meta-plot will be centered on the start position.
`UnMap` | List object representing the position of un-mappable reads. Default: not used.
`debug` | If set to TRUE, provides additional print options. Default: FALSE
`...` | Extra argument passed to mclapply

### Value

Returns a vector of counts, each representing the number of reads inside each genomic interval.

### Author(s)

Charles G. Danko and Minho Chae

[Package groHMM version 1.20.0 Index]