manhWngr {gQTLstats} | R Documentation

## manhattan plot with named GRanges

### Description

manhattan plot with named GRanges

### Usage

    manhWngr(store, probeid = "ENSG00000183814.10", sym = "LIN9", fdrsupp, namedGR, slstyle = "NCBI", xlab.in = sym, ylab.in = "-log10 FDR", applyFDRfilter = TRUE)

### Arguments

`store` | instance of `ciseStore-class`
`probeid` | name of feature identifier to use for cis association
`sym` | symbol for feature identifier
`fdrsupp` | instance of `FDRsupp-class`
`namedGR` | `GRanges` instance with 'name' in mcols element
`slstyle` | seqlevelsStyle
`xlab.in` | x axis label
`ylab.in` | y axis label
`applyFDRfilter` | if TRUE, use the filter defined in the `filterUsed` element of the object supplied as `fdrsupp` on the output
`...` | additional arguments for plotting

### Examples

    require(geuvStore2)
    require(gQTLBase)
    store = makeGeuvStore2()
    data(hmm878)
    data(filtFDR)
    manhWngr(store, fdrsupp=filtFDR, namedGR=hmm878)

[Package gQTLstats version 1.18.0 Index]