
R Under development (unstable) (2016-10-22 r71573) -- "Unsuffered Consequences"
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> Sys.sleep(0.000000)
> options(BatchJobs.on.slave = TRUE, BatchJobs.resources.path = '/udd/stvjc/VM/TRANS_2016/PROCODE/PERM_3/procoMult2016_chr6-files/resources/resources_1480823186.RData')
> library(checkmate)
> library(BatchJobs)
Loading required package: BBmisc
> res = BatchJobs:::doJob(
+ 	reg = loadRegistry('/udd/stvjc/VM/TRANS_2016/PROCODE/PERM_3/procoMult2016_chr6-files'),
+ 	ids = c(80L),
+ 	multiple.result.files = FALSE,
+ 	disable.mail = FALSE,
+ 	first = 1L,
+ 	last = 100L,
+ 	array.id = NA)
Loading registry: /udd/stvjc/VM/TRANS_2016/PROCODE/PERM_3/procoMult2016_chr6-files/registry.RData
Loading required package: GenomeInfoDb
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:BBmisc’:

    normalize

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, cbind, colMeans, colnames,
    colSums, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
    grepl, intersect, is.unsorted, lapply, lengths, Map, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
    rbind, Reduce, rowMeans, rownames, rowSums, sapply, setdiff, sort,
    table, tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: IRanges

Attaching package: ‘IRanges’

The following object is masked from ‘package:BBmisc’:

    collapse

Loading required package: GenomicFiles
Loading required package: GenomicRanges
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: ‘Biobase’

The following object is masked from ‘package:checkmate’:

    anyMissing

Loading required package: BiocParallel
Loading required package: Rsamtools
Loading required package: Biostrings
Loading required package: XVector
Loading required package: rtracklayer
Loading required package: geuvPack
Loading required package: gQTLstats


Loading required package: Homo.sapiens
Loading required package: AnnotationDbi
Loading required package: OrganismDbi
Loading required package: GenomicFeatures
Loading required package: GO.db
Loading required package: org.Hs.eg.db
Loading required package: TxDb.Hsapiens.UCSC.hg19.knownGene
Loading required package: VariantAnnotation

Attaching package: ‘VariantAnnotation’

The following object is masked from ‘package:base’:

    tabulate

Loading conf: 
2016-12-04 04:53:11: Starting job on node node047.
Auto-mailer settings: start=none, done=none, error=none.
Setting work dir: /udd/stvjc/VM/TRANS_2016/PROCODE/PERM_3
########## Executing jid=80 ##########
Timestamp: 2016-12-04 04:53:11
BatchJobs job:
  Job id: 80
  Fun id: a9ee5dd80637c905e1fcebd36385a8bc
Warning in formals(fun) : argument is not a function
  Fun formals: 
  Name: NA
  Seed: 182758541
  Pars: <unnamed>=80
Setting seed: 182758541
using assay() to extract 'expression' matrix from RangedSummarizedExperiment
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’

Attaching package: ‘Matrix’

The following object is masked from ‘package:VariantAnnotation’:

    expand

The following objects are masked from ‘package:GenomicFiles’:

    pack, unpack

The following object is masked from ‘package:S4Vectors’:

    expand

checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[1]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Warning in .vcf_usertag(map, tag, nm, verbose) :
  ScanVcfParam ‘info’ fields not found in  header: ‘LDAF’
checking for universal heterozygous loci for exclusion (as dropUnivHet == TRUE) ...
Warning in AllAssoc(proco1[bls[[j]], ], TabixFile(gtpath(NCHR, useS3 = FALSE,  :
  found 1 universally heterozygous loci.
done checking.
Result:
List of 4
 $ obs   :Formal class 'GRanges' [package "GenomicRanges"] with 6 slots
  .. .. [list output truncated]
 $ dist  : num [1:10, 1:3914] Inf Inf Inf Inf Inf ...
 $ perms :List of 3
 $ pdists:List of 3
NULL
Writing result file: /udd/stvjc/VM/TRANS_2016/PROCODE/PERM_3/procoMult2016_chr6-files/jobs/80/80-result.RData
2016-12-04 08:18:14: All done.
Setting work back to: /udd/stvjc/VM/TRANS_2016/PROCODE/PERM_3
Memory usage according to gc:
           used  (Mb) gc trigger   (Mb)  max used   (Mb)
Ncells  6230618 332.8    9968622  532.4   9968622  532.4
Vcells 19400419 148.1  137814774 1051.5 307865288 2348.9
Warning messages:
1: replacing previous import ‘ggplot2::last_plot’ by ‘plotly::last_plot’ when loading ‘gQTLstats’ 
2: replacing previous import ‘ggplot2::Position’ by ‘BiocGenerics::Position’ when loading ‘gQTLstats’ 
3: replacing previous import ‘plotly::rename’ by ‘S4Vectors::rename’ when loading ‘gQTLstats’ 
4: replacing previous import ‘plotly::slice’ by ‘IRanges::slice’ when loading ‘gQTLstats’ 
5: replacing previous import ‘plotly::select’ by ‘AnnotationDbi::select’ when loading ‘gQTLstats’ 
> BatchJobs:::setOnSlave(FALSE)
> 
> proc.time()
     user    system   elapsed 
11987.429   176.762 12336.485 
